Gene detail

Gene detail information of Glyur000870s00029775

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13080.1	0	multidrug resistance-associated protein 3
NR	XP_006586123.1	0	PREDICTED: ABC transporter C family member 3-like isoform X3 [Glycine max]
COG	NP_969385.1	1.00E-157	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9LK64\|AB3C_ARATH	0	ABC transporter C family member 3
trEMBL	tr\|I1KYH1\|I1KYH1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G43810.1}

Sequence

Transcript Sequence

>Glyur000870s00029775.1
ATGCTGTTACTCTTCTCTCACTATTCCTCCTCCATCATGATGATGCCCCCTGGTACTGATTTTCTCCTCCAACCCATGTTCACACGAGGGATATCTGCTTCACTGCACCTGGTCTTGTTACTTGTTCTGGTTGTATCATGGGTATGGGAGAAAGTCCATGTGGACCAAAGAGAAAAGAGTGAAAGTAGAAATAGATTCCCTGATCCTGGTTTCTTGTCCCACAAACACAGTCTAGTCTGTAGCTTAGCTATTTGTGTGTTTAACCTTGTGTTGTGCTTACTGAGCTACTTTCCCTTGTATGAAGAACATGATGGTTCAAATGAGCTTGTCACTATTTTGGATTTGGTTATCAAAACAGTAGCTTGGGGTGTTATTTGTGTTTATTTGCATGTTAGAAACTCCAATGCACAGGAACCTAGTTTCCCATGTTTCTTGAGAATTTGGTGCTGGGTCTATGCCTTTGTGTCTTCTTGTTGCCTTGTTACAGACTTTGTAATAATCTATGGAAACCATGTTTCCTTGCCAATCATATACCTGGTTTCTGATATAGGTTCCTCTGTTACGGGGTTGTTTCTTTGTTATGTTGGATGTTCTACCAACAATATGGCTAAACTTGCCCCTCTTGAAGAGTCCCTTTTGAACGGTGGCAACTCTAGTTTAAGCAACAATTCTGATCCCGAAAAGAATGGAGGAAATGAAATTTTAACCAGTTATTCAAGTGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTAATAACTTTAGGGAATAAAAAAACTTTAGACCATGAGGACCTACCACTGCTTGGTATCAATGACAGTGCCTATGGGGCTTTTCAAACTTTTAGAAGCAAGCTTGAGTCAGAGTGTGGTAGTGTTAGGAGTGTGACAACTCTTAAGCTGGTCAAGGTGTTATTCTTCTCAACATGGCAAGGGATCCTTTTATCAGGCTTATTTGCATTCTTGTACACATGTGCTTCGTATGTTGGACCCTACCTTATTGACAACCTTGTCCAATACCTCAACGGGGAACACAGGTATAAAAATGAAGGCTATGTTTTGGTTATGGCATTTGTTACCGCAAAGCTTGTAGAGTGCCTTTCACAGAGGCACTGGATGTTTAAGTTCCAGCAGGTTGGGGTTAAGATGCAATCAATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACCCTTTCATGTCAATCAAAGGAGGGACACAGCAGTGGTGAAAACATCAATTTGATGACTGTTGATGCTGAAAGGATTGGTGAATTCTGTTGGTACATGCATGATCCATGGATGGCTGTTCTGCAAGTTGCTTTGGCCTTGTTTATTCTTCATAGAAGTGTAGGGGTCGCTTCAATAGCCGCTTTTGCTGCCACTGTAATTGTGATGCTGCTAAACCATCCTGTGGCATCATTGCAAGAGAAGTTCCAAAGTAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCGACGTCTGAGATTCTAATGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATCATTCAGCTTAGGAAGTCAGAGGAAACATGGCTGAAGAAATTTCTTGTTGGTACAGCAATTGTTAGATTTCTCTTCTTTAATGCCCCAACGTTTGTTGCTGTGGCTACTTTTGGGACTTGTGTTCTTATAGGCATCCCACTTGAATCAGGGAAGATCTTATCTGCTCTTGCTACATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCCCTAGATAGGATTGTAGCATTTCTTCGTCTAGATGACTTGAAAACTGATGTTGTGGAGAAGCTTCCGCGGGGTAGTTCTGATATAGCAATTGAGTTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCTATAAATACAACATTGAAAAACATAAATCTCAGAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAGTACCAAAGCTATCTGGGACCCTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGCAAGATAGAGGAGAACATACTATTTGGTAGAGAGATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTGCCTTGATAAAAGACCTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCCCGAGCTCTTTATCAAGATGCTGATATATATCTGCTTGATGATCCCTTTAGTGCTGTGGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAGCAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTAGGTCAGGCACCGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCTTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGCACACATTTAAATCATCAAGTATTACCATGAAGGACACAGATTCATTAAGTGATTTTGAACGTGAGCAAGAAGTGGAAAACATAGATGATCAAATTGGCAAGTCAGAGGACACAATTGAGCCGAAAGGCCAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAAAGTCTTCTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTACCCTTCATATTACTTTCACAGGCACTTACTGTGGTTCTTCAGATTGGAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGATATTGGAAGCTTTACACTCATGGTTGTCTATGTTTCTTTGGCGATTGGAAGTTCCTTTACCACCCTTGCCAGAGCAGTTCTTGCTGTGATAGCTGGATACAAGACAGCCACCATGCTTTTCAACAAAATGCATTTGTGCTTTTTTCGAGCGCCAATGTCATTTTTTGATGCCACCCCAAGTGGGAGAATTCTCAATAGAGCTTCAACAGACCAAAGTGCAATAGACATGAGCATGCCAAATCTAGCATGGGGATTTACCTACAATCTGATTCAGCTCTTTGGAAATATTGCTGTGATGTCCCAAGCTGCATGGCAGGTGTTTATCGTATTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATACTACGCAGCATCAGCACGGGAATTGGCACGATTGGTTGGCATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACGATTTCTGGATCCACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATAAATATGAAATTGATAGAAAAATACTCCCAACCCAAATTATACTGTGCTAGTGCAATGGAATGGCTAAGTTTCAGATTGGATATTTTATCCTCTACCATGTTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAGTTCAATAGCTGATCCTGGCATTGCGGGATTGGCTGTGACATATGGGCTTAATCTAAATTATGTACAATTTAGTGTAATCTGGATTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGGATACTTCAGTACACCTCCATCCCAAGTGAAGCACCTCTTGTTATAAAAGACAACCAACCAGATTATTCTTGGCCATCGTTCGGAGAAGTTCATATCCAGGATTTACAGGTTCGATATGCTCCTCATTTGCCTCTTGTTTTACGTGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACTGGAAGTGGGAAATCGACTTTAGTGCAAACACTTTTCAGACTTGTTGAACCTGTTGCAGGACAAATATTGATAGATAACATTAACATCTCTTTGATTGGAATTCATGATTTACGGTCCAGGCTAAGCATTATTCCTCAGGATCCAACAATGTTTGGAGGGACTGTAAGAAGCAACATGGACCCACTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTGGATATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAAGCTTGACTCCATAGTTACTGAAAATGGAGAAAACTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTTGGCCGTGTTCTGCTTAAGAAAAGCAAGATCTTGGTGCTCGACGAAGCCACCGCATCGGTTGATACAGCTACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTCGATAGGCTTGTTGAGGAATATGATTCACCAAACAAACTACTTAAGAACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACTCTGGTTTTGGAAGTTGA

Protein Sequence

>Glyur000870s00029775.1
MLLLFSHYSSSIMMMPPGTDFLLQPMFTRGISASLHLVLLLVLVVSWVWEKVHVDQREKSESRNRFPDPGFLSHKHSLVCSLAICVFNLVLCLLSYFPLYEEHDGSNELVTILDLVIKTVAWGVICVYLHVRNSNAQEPSFPCFLRIWCWVYAFVSSCCLVTDFVIIYGNHVSLPIIYLVSDIGSSVTGLFLCYVGCSTNNMAKLAPLEESLLNGGNSSLSNNSDPEKNGGNEILTSYSSAGFFSILTFSWMSPLITLGNKKTLDHEDLPLLGINDSAYGAFQTFRSKLESECGSVRSVTTLKLVKVLFFSTWQGILLSGLFAFLYTCASYVGPYLIDNLVQYLNGEHRYKNEGYVLVMAFVTAKLVECLSQRHWMFKFQQVGVKMQSMLVAMIYAKGLTLSCQSKEGHSSGENINLMTVDAERIGEFCWYMHDPWMAVLQVALALFILHRSVGVASIAAFAATVIVMLLNHPVASLQEKFQSKVMEFKDKRMKATSEILMNMRILKLQAWEMKFLSKIIQLRKSEETWLKKFLVGTAIVRFLFFNAPTFVAVATFGTCVLIGIPLESGKILSALATFRILQMPIYSLPDTISMIAQTKVSLDRIVAFLRLDDLKTDVVEKLPRGSSDIAIELVDGNFSWDLSSINTTLKNINLRVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGREMDREKYEKVLEACALIKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKAKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILRSGTDFMELVGAHRAALSSVKSLERRHTFKSSSITMKDTDSLSDFEREQEVENIDDQIGKSEDTIEPKGQLVQEEEREKGRVGFKVFWKYITTAYGGALVPFILLSQALTVVLQIGSNYWMALATPVSATAEPDIGSFTLMVVYVSLAIGSSFTTLARAVLAVIAGYKTATMLFNKMHLCFFRAPMSFFDATPSGRILNRASTDQSAIDMSMPNLAWGFTYNLIQLFGNIAVMSQAAWQVFIVLIPVMAACIWYQRYYAASARELARLVGICQAPVIQHFSETISGSTTIRSFEQESRFNEINMKLIEKYSQPKLYCASAMEWLSFRLDILSSTMFAFCLVFLISFPSSIADPGIAGLAVTYGLNLNYVQFSVIWILCNLENKIISVERILQYTSIPSEAPLVIKDNQPDYSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLVEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFGGTVRSNMDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSILDRLVEEYDSPNKLLKNKSSSLAQLVAEYTRRSNSGFGS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00870	387	6370	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000870s00029775.1	PF00664.18	ABC_membrane	317	584	6.90E-21
Glyur000870s00029775.1	PF00005.22	ABC_tran	649	783	6.70E-21
Glyur000870s00029775.1	PF00664.18	ABC_membrane	946	1205	1.30E-24
Glyur000870s00029775.1	PF00005.22	ABC_tran	1279	1426	3.60E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.609
SRR1783600	control	4.577
SRR1783602	moderate drought stress	5.594
SRR1811619	moderate drought stress	5.554

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.480
DRR006520	Root Summer glycyrrhizin high producing strain	4.624
DRR006521	Root Winter glycyrrhizin high producing strain	1.746
DRR006522	Root Winter glycyrrhizin high producing strain	1.736
DRR006523	Root Summer glycyrrhizin low producing strain	5.018
DRR006524	Root Summer glycyrrhizin low producing strain	5.157
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.508
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.523

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.414
SRR2868004	Drought Stress (root)	2.177
SRR2967015	Control (root)	1.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.685
SRR9715740	Leaf	4.125
SRR9715741	Leaf	1.483
SRR9715739	Root	0.389
SRR9715742	Root	0.720
SRR9715743	Root	0.736

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.115
SRR8749028	MeJA induced 9h	7.154
SRR8749029	MeJA induced 9h	2.897
SRR8749030	Uninduced	1.058
SRR8749031	Uninduced	0.492
SRR8749032	Uninduced	0.607

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.160
SRR8400027	Control - Root	3.003