Gene detail information of Glyur000869s00032501 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02468.1 | 5.00E-13 | conserved peptide upstream open reading frame 9 |
| NR | AAB03864.1 | 2.86E-28 | putative ORF; conserved in 5' leaders of plant SAMdC [Pisum sativum] |
| trEMBL | tr|Q43625|Q43625_PEA | 1.00E-28 | Putative ORF; conserved in 5' leaders of plant SAMdC {ECO:0000313|EMBL:AAB03864.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00869 | 99196 | 101944 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000869s00032501.1 | PF08132.6 | AdoMetDC_leader | 1 | 54 | 4.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 300.046 |
| SRR1783600 | control | 301.823 |
| SRR1783602 | moderate drought stress | 240.041 |
| SRR1811619 | moderate drought stress | 238.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 523.528 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 518.090 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 203.115 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 199.181 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 427.394 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 424.803 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 344.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 341.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1232.156 |
| SRR2868004 | Drought Stress (root) | 1019.558 |
| SRR2967015 | Control (root) | 778.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 729.647 |
| SRR9715740 | Leaf | 576.135 |
| SRR9715741 | Leaf | 892.891 |
| SRR9715739 | Root | 958.286 |
| SRR9715742 | Root | 907.980 |
| SRR9715743 | Root | 919.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1680.618 |
| SRR8749028 | MeJA induced 9h | 1840.884 |
| SRR8749029 | MeJA induced 9h | 1579.091 |
| SRR8749030 | Uninduced | 1153.367 |
| SRR8749031 | Uninduced | 1606.919 |
| SRR8749032 | Uninduced | 1027.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 775.801 |
| SRR8400027 | Control - Root | 765.252 |