Gene detail

Gene detail information of Glyur000869s00032498

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16000.1	0	NSP-interacting kinase 1
NR	XP_006574993.1	0	PREDICTED: protein NSP-INTERACTING KINASE 2-like isoform X1 [Glycine max]
COG	YP_001192956.1	2.00E-20	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9LFS4\|NIK1_ARATH	0	Protein NSP-INTERACTING KINASE 1 (Precursor)
trEMBL	tr\|K7K803\|K7K803_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G14160.2}

Sequence

Transcript Sequence

>Glyur000869s00032498.1
CTTTTGAATTATATATTCTTTGCTTTGCTTTTCTTTGTTGAGCCATTGGGGCAAGCATGCTGCTTCTTTTTTAAGTCATTTTACTTCTGGACTCTGATACAAGTCTGACACAAAGGGGTGAGAGTTAGTGAAAATTCTGGCCTGAAAAGCAGAATGGCACTGGTTCCTCCTTCTGATGTAAACATGACATGTTGCAACAACAAAAACAAACCAAGTTGAACTACTTGGTGGTGCTGCTGATTGCTGAATCCTTCAAAACCTGCTNCTTTTACTTTACTTGTTGCCTCCTTAAGACATAGGCACAGAACTTCACCTTGTTAATTTGTTTGTACTGATCCTTTAAAAAACCCAACAATGGAAATGAGAGGGGATGATGTAGCCTTGTTTTGTTTGGCTTTGTTCTTCTTGTGGACTTCAGTATCTGNTTTGCTTTCTCCTAAAGGTGTCAACTATGAAGTTCAAGCTTTGATGGGCATTAGGAATTCTCTGGTGGATCCTCATTCTGCTTTAGGTAACTGGGATGGTGATGCTGTGGATCCTTGCAACTGGGCTATGGTTACTTGTTCTCCTGATCGTTTTGTAATTGCCCTTGGAATTCCAAGCCAGAANATATCTGGGACTCTTTCATCAAGCATAGGCTCCTTACCAAACCTACAGACTGTGCTGCTGCAGGATAATAATATCTCAGGANCAATCCCCTCTGAGATTGGGAGGCTCCAAAGGCTTCAAACTCTTGATCTTTCTGACAATTTCTTCACTGGTCAACTTCCAGATTCTCTGTCCCATATGAAGGGTCTCCATTATTTGAGGCTAAACAATAACAGTCTCTCTGGACCAATTCCTTCCTCTTTGGCTAACATGAGCCAAATTGCCTTTCTGGATCTGTCTTATAATAACTTGAGTGGACCTGTACCTAGACTAAATGCAAAAACATTCAATATTGTGGGCAATCCCCAGATATGTGCAACTGGAGTTGAGCAAAACTGTTTTAGAACAACATTAGTTTCTTCAGCTATGAATAATTCTCAAGATTTACAATCCTCCAATAGACCAAAAAGTCACAAAGTTGCCTTGGCGTTTGCTTCAAGCCTAAGCTGCATCTGCTTACTAATTCTGGGGTTTGGCTTCCTCCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTGAATGAACAACACCGTGAAGAGATTTGCCTTGGAAACCTCAAGAAGTTCCATTTCAGAGAACTTCAGGTTGCTACAAACAACTTCAGCAGCAAAAACTTGATTGGCAAAGGTGGTTTTGGGAATGTCTACAAGGGCTATCTCTCAGATGGTACAGTTATAGCAGTAAAAAGGCTTAAAGATGGTAATGCAATTGGAGGTGAGATCCAATTCCAGACTGAAGTAGAGATGATCAGCTTAGCTGTGCATAGGAATCTTCTTCGCCTGTATGGATTTTGCATGACAGCTTCAGAGAGGCTCTTGCCAGCTTTAGACTGGGCTACAAGGAAGAGGATAGCTTTAGGAGCTGCAAGAGGTTTGCTATATTTGCATGAGCAGTGTGACCCAAAGATCATCCACAGGGATGTTAAGGCTGCAAACATCTTGCTTGATGATTACTGTGAGGCTGTGGTAGGAGACTTTGGGTTGGCAAAGCTGTTGGACCACAGGGATTCACATGTGACAACAGCTGTGAGAGGCACTGTTGGGCACATAGCCCCTGAGTATCTCTCAACAGGCCAATCCTCTGAGAAAACAGATGTGTTTGGGTTTGGTATTCTTCTTCTTGAATTGATATCTGGCCAGAGAGCTCTTGAGTTTGGCAAAGCAGCTAACCAGAAAGGAGCCATGCTTGACTGGGTGAAGAAAATACATCAAGAGAAGAAGATTGACTTGTTAGTGGACAAGGACCTGAAGAACCACTATGATAGGATTGAGCTAGACGAGATAGCTCAAGTGGCTCTTTTGTGCACTCAGTACCTTCCAAGCCACAGGCCCAAGATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGGCTTGCTGAGAAATGGGAAGCCTCACAGAGAGCTGATCATGCAACAAGGTTAGGGTGGTGCAGAGACAAAACATTCTCAAATGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00869	55111	60731	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000869s00032498.1	PF08263.7	LRRNT_2	32	71	9.00E-13
Glyur000869s00032498.1	PF13855.1	LRR_8	123	182	4.20E-09
Glyur000869s00032498.1	PF00069.20	Pkinase	305	552	1.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.750
SRR1783600	control	24.870
SRR1783602	moderate drought stress	27.044
SRR1811619	moderate drought stress	26.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.318
DRR006520	Root Summer glycyrrhizin high producing strain	26.951
DRR006521	Root Winter glycyrrhizin high producing strain	1.432
DRR006522	Root Winter glycyrrhizin high producing strain	1.355
DRR006523	Root Summer glycyrrhizin low producing strain	12.682
DRR006524	Root Summer glycyrrhizin low producing strain	12.260
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.802

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	123.860
SRR2868004	Drought Stress (root)	115.741
SRR2967015	Control (root)	123.654

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.264
SRR9715740	Leaf	13.973
SRR9715741	Leaf	18.082
SRR9715739	Root	18.800
SRR9715742	Root	37.299
SRR9715743	Root	33.159

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.131
SRR8749028	MeJA induced 9h	8.266
SRR8749029	MeJA induced 9h	2.549
SRR8749030	Uninduced	2.187
SRR8749031	Uninduced	0.288
SRR8749032	Uninduced	0.436

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	80.131
SRR8400027	Control - Root	75.098