Gene detail information of Glyur000869s00032496 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 4.00E-120 | F-box/RNI-like superfamily protein |
| NR | XP_003518816.1 | 0 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Glycine max] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 5.00E-166 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|I1JEP2|I1JEP2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G14150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00869 | 48287 | 50348 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000869s00032496.1 | PF08387.5 | FBD | 349 | 388 | 4.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.622 |
| SRR1783600 | control | 10.893 |
| SRR1783602 | moderate drought stress | 10.261 |
| SRR1811619 | moderate drought stress | 10.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.116 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.724 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.769 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.679 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.845 |
| SRR2868004 | Drought Stress (root) | 11.353 |
| SRR2967015 | Control (root) | 12.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.956 |
| SRR9715740 | Leaf | 8.142 |
| SRR9715741 | Leaf | 8.060 |
| SRR9715739 | Root | 2.418 |
| SRR9715742 | Root | 5.092 |
| SRR9715743 | Root | 4.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.931 |
| SRR8749028 | MeJA induced 9h | 3.384 |
| SRR8749029 | MeJA induced 9h | 3.830 |
| SRR8749030 | Uninduced | 2.417 |
| SRR8749031 | Uninduced | 3.100 |
| SRR8749032 | Uninduced | 3.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.095 |
| SRR8400027 | Control - Root | 19.554 |