Gene detail information of Glyur000869s00032494 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23955.1 | 9.00E-07 | F-box family protein |
| NR | XP_004490312.1 | 3.74E-49 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7K9S5|G7K9S5_MEDTR | 2.00E-49 | F-box/FBD-like domain protein {ECO:0000313|EMBL:AES96546.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00869 | 39369 | 43929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000869s00032494.1 | PF08387.5 | FBD | 179 | 218 | 4.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.826 |
| SRR1783600 | control | 6.813 |
| SRR1783602 | moderate drought stress | 7.466 |
| SRR1811619 | moderate drought stress | 7.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.222 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.771 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.290 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.519 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.082 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.491 |
| SRR2868004 | Drought Stress (root) | 16.476 |
| SRR2967015 | Control (root) | 13.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.927 |
| SRR9715740 | Leaf | 4.610 |
| SRR9715741 | Leaf | 2.590 |
| SRR9715739 | Root | 0.843 |
| SRR9715742 | Root | 0.847 |
| SRR9715743 | Root | 1.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.987 |
| SRR8749028 | MeJA induced 9h | 10.476 |
| SRR8749029 | MeJA induced 9h | 8.176 |
| SRR8749030 | Uninduced | 11.275 |
| SRR8749031 | Uninduced | 9.177 |
| SRR8749032 | Uninduced | 5.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.690 |
| SRR8400027 | Control - Root | 5.524 |