Gene detail

Gene detail information of Glyur000869s00032493

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13570.1	2.00E-25	F-box/RNI-like superfamily protein
NR	AFK36982.1	1.35E-93	unknown [Medicago truncatula]
Swissprot	tr\|Q9FZ70\|FDL1_ARATH	7.00E-28	F-box/FBD/LRR-repeat protein At1g13570
trEMBL	tr\|I3S9P0\|I3S9P0_MEDTR	5.00E-94	Uncharacterized protein {ECO:0000313\|EMBL:AFK36982.1}

Sequence

Transcript Sequence

>Glyur000869s00032493.1
ATGTATGATCATGCTGCACTTGTCCTAAGTAGAAAACCAGATTTACTTATGACTCGGTCAAAGAAGAAGGCTGATCATGGTGATGACATTGATCGAATCAGTGACTTACCATGTAATGTGATTGATGGCATCCTAGAGCACTTGGACATTGTGGACAGAGTTAGGACCAGTATTCTATCGAGAAAATGGAGGTATATGTGGGCTTCAGTCCCACAACTTGGGTTTTCTGGAATATTTTTTAATGATTATGCGCATCTCGGAAAGCTTGCAATATCTAGTATTGTCACGGAAGTTATTTCACTCCACAATGGGCCAATACACAAGTTTGCNCTTGACATCCCTCCGAGACACAGGATCGTAATTGAATGCCTCAATAAATGGATTTTGTATTTGTCAAGGAATGGCATTAAAGAACTTGCGCTTGAAAACCTGGATTTTGAATGTCCCTATCAAATGCCATTTGATGACCTTTCCTCGTTTAAATTATCAGTTCCACCTAATTTTTGTGGCTTTAAAAATCTTCTTACCCTTCACCTGTATTGCATTACATTTGAGTCCTCTGGTGCACTTGGGAGTCTTATTTCTGGTTGCCCCTTACTTCAAGAGCTCAAGATTTCATACTGTGATGGTTTTGAATGTATCGATATCTTTGTTCCTACTCTCAAAGTCTTGAGCATATATGGTGATGAAGATGAAGTTATCAAGTCAATTTGTCTGAACAAAGCAAATAATCTGATTGACCTTACACTCATCATTGCTTGGCACATGGTCGAGAAAGGCACAGGATCTGATTTGATTGTCAGAGGATTGCCAAAAATTCATAGGCTTACACTGGGCACAACTTGTGATAAGATCTTGTCTGCAGATACCATTTCACAAACGCTACTAAATTCGTTCAGCTCCTTGGAGTATCTCAAATTGTTTGCTGTTTTGAATGAAAGAGGAGAATTTTTGTTTATTAATGAAACATTTGGTACACGAGAACTGTCGGCGGAAAGTACCTCTGGTGATGCACAAGTGCCAGCAGAGGAGTTAGAGTGCAAAAGCTGTTGCCCTAATCAACTTCAAACCGTGAATATCAAAAGTTTGACACGGTTCATACTTGCAAATTGCTCATCGCTAAGGACTCTTACTCTTGAAGTTGGTCATGGTGACACAAGGCTAATAGATGCACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00869	26639	30495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000869s00032493.1	PF00646.28	F-box	32	69	3.30E-06
Glyur000869s00032493.1	PF07723.8	LRR_2	174	198	3.70E-05
Glyur000869s00032493.2	PF00646.28	F-box	36	73	2.90E-06
Glyur000869s00032493.2	PF07723.8	LRR_2	178	202	3.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.750
SRR1783600	control	1.706
SRR1783602	moderate drought stress	1.569
SRR1811619	moderate drought stress	1.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.062
DRR006520	Root Summer glycyrrhizin high producing strain	0.909
DRR006521	Root Winter glycyrrhizin high producing strain	1.294
DRR006522	Root Winter glycyrrhizin high producing strain	1.078
DRR006523	Root Summer glycyrrhizin low producing strain	0.078
DRR006524	Root Summer glycyrrhizin low producing strain	0.025
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.111
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.784
SRR2868004	Drought Stress (root)	2.346
SRR2967015	Control (root)	2.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.299
SRR9715740	Leaf	2.413
SRR9715741	Leaf	2.843
SRR9715739	Root	0.189
SRR9715742	Root	0.992
SRR9715743	Root	0.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.290
SRR8749028	MeJA induced 9h	0.805
SRR8749029	MeJA induced 9h	0.621
SRR8749030	Uninduced	0.443
SRR8749031	Uninduced	0.454
SRR8749032	Uninduced	0.312

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.433
SRR8400027	Control - Root	3.269