Gene detail

Gene detail information of Glyur000867s00025590

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51690.1	9.00E-150	1-amino-cyclopropane-1-carboxylate synthase 12
NR	KEH26498.1	0	1-aminocyclopropane-1-carboxylate synthase [Medicago truncatula]
COG	YP_004582080.1	6.00E-56	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q8GYY0\|1A112_ARATH	0	Probable aminotransferase ACS12
trEMBL	tr\|A0A072UBT9\|A0A072UBT9_MEDTR	0	1-aminocyclopropane-1-carboxylate synthase {ECO:0000313\|EMBL:KEH26498.1}

Sequence

Transcript Sequence

>Glyur000867s00025590.1
ATGGTAATAACAACAACAACAAAACAAAAACACAAAAAGAGAGACAAAACAACAAAACACACACTCCCCTCTTTGGCTTTCTTTGGCACCTTCTTCCTTCATTCTTTCCCTCTTCTTCACCCTTCCTTCCTTCATTCATTCATTCCTTCACTCTTCTTCATTTCAAACCACACATACCAAACCCATTCTTCAATCCCTCCACCATCCACCACAACCGGGTCAATGACCCAAACCCAAAAACCCACCACCACCCCAAAAAAAACCCAAACCCGTGACCCCAAAAAACCCCCTCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGCGGCATGAAACTAATCGTGCCCCTTCAAGGCGTAGTTCAAGGCCGTGGAGGCCTTCTTCTCGGTAGTTTAATCCCTTGTGCACTCTTCTACTTCCTTCAACTCTACCTTAAACGACGCCGTTCCAACAGTAACCCTCCTTCTTCTCCTTCTTCCTCTTCTTCACCTACCCTTCTCCTCCCTCGTTCCTCTTCTCGCTCCAACTTGTCGAACCGTGGATCCATTTCACGAGTTCGGGTATCTAAACTCGCTACCCAACTCGCTANACCCGGTGATGACTCACTCTATTACCTTGGCCTTCAAAGGGCCTCCCTCGATCCTTACGATAAATGGTTGTTGCGGAACTTGGAGGGATCGGTGATGGGGAGTGGCGATGTCAGTTTGAGCATTAATGGGATTGTGCCGTATCAGCCGTTTCATGGAATGGAGGAATTGAAAATGGCCTTATCAGATTTTATGCATCAGGTGATGGGGGGATCAGTGAAATTTGACCCATCTAATATGGTACTTACATCTGGAGCAANTCCTGCAATTGAGATACTATCCTTCTGCTTGGCAGACCAGGGAAATGCATTCCTTGTCCCTACACCTTATTATCCAGGCTTTGACNGGGATGTGAGATGGCGTCCGGGGGTAGACTTGATACCTGTTCACTGTCGTAGTACCGATAATTTCAATCTAAATATCACCGCTCTTGAACAAGCATATAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGAATTCTCATCTCCAACCCTTCAAATCCTGTTGGCAATGTTCTGACACAAGACACACTTTGCAGTCTTCTATACTTTGCCGAAGATAAAAACATCCACATCATTGCCGATGAAGTATTTGCTGGCTCCACATATGGAAGTGAGAAGTTTGTGAGTATAGCTGAGATTCTCGATTCAGAATACGTAGACAAGAGCCGGGTTCATATAATATATGGCCTGTCGAAAGACCTCTCGCTTGCTGGATTTAGAGTTGGGGTTATTTATTCATTCAACACCGATGTTTTGGCTGCTGCCAAAAAAATGAGTAGATTTTCCTCTATATCTGCTCCCACACAGAGGTTAGTTAGCTCAATGCTTTCAGATGAACGATTTATCCAGGAGTACATTGAAACCAACCGGAATAGAATACGGCAGGTGCGTGATGAATTTGTGGACCGTTTAAGTAAACTAGGAATCAAGTGTGCTAAGAGCAGTGGTGGTATGTTCTGTTGGGCCAATATGAGTGGATTAATCCGACCTTATAGTGAGAAAGGAGAACTCGAGTTGTTTGAGAAGTTTATGAGTTTAGCTAAGATCNATATAACTCCTGGATCAGCCTGCCATTGCATAGAACCGGGATGGTTTCGAATTTGTTTCGCTACTATATCTTTTGAGGAAATCCCGCTAGTTATTGAACGGATTAGTCGAGTTGTTGAAAGTTGTAAATCTTCCAGTTGAAGTTCCCATTTTTTTTCCCCTGACATTTATGGTTATTGCCTCATGTTGCTATCAGAAGTTGCTGTTTTAGAAAATTTTGGGAAGGAAAAGTATACATCCCTAGTTATCATCAAGTTCAGCTGTCCTTCAGAATCATCCAGGATTCATTTACATTGCAGAAGAGATATTCTCTTTGCATTGCAAAATCTCAACAGAATAAACCCATAAAAAGAGTTTGATTTAAAATCAACAGGCAGATGAGAATTTTGGTGCAGACCAGTTTTGGCCTTCAATCAACATGCCTTATTGCCTAGGCCAGTTTCAGTCTTGGAAAAATACTCTTTTTCTTGAGTAGTTCTTCTCTTCTCAATCATGTTGCTGCTGGTTGCCAACGTACAGTATAACAAGAGTTTGTTTTCTTGTGATTTCTGCATAATCCCTGAAGGCAAAANGTAAAATTTGGTTTGAAATGTGTTTTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00867	102535	107462	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000867s00025590.1	PF00155.16	Aminotran_1_2	242	586	1.70E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.118
SRR1783600	control	70.342
SRR1783602	moderate drought stress	53.452
SRR1811619	moderate drought stress	54.013

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	59.864
DRR006520	Root Summer glycyrrhizin high producing strain	59.368
DRR006521	Root Winter glycyrrhizin high producing strain	15.538
DRR006522	Root Winter glycyrrhizin high producing strain	15.353
DRR006523	Root Summer glycyrrhizin low producing strain	57.761
DRR006524	Root Summer glycyrrhizin low producing strain	58.260
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.772
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.371

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.888
SRR2868004	Drought Stress (root)	12.341
SRR2967015	Control (root)	10.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.595
SRR9715740	Leaf	26.474
SRR9715741	Leaf	17.382
SRR9715739	Root	45.778
SRR9715742	Root	41.065
SRR9715743	Root	40.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.922
SRR8749028	MeJA induced 9h	3.230
SRR8749029	MeJA induced 9h	4.328
SRR8749030	Uninduced	3.131
SRR8749031	Uninduced	2.298
SRR8749032	Uninduced	2.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.357
SRR8400027	Control - Root	61.643