Gene detail information of Glyur000867s00025583 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51720.1 | 3.00E-31 | 2 iron, 2 sulfur cluster binding |
| NR | KHN27839.1 | 3.84E-53 | CDGSH iron-sulfur domain-containing protein 2 [Glycine soja] |
| Swissprot | tr|Q9FLI7|NEET_ARATH | 1.00E-42 | CDGSH iron-sulfur domain-containing protein NEET |
| trEMBL | tr|I1MQ76|I1MQ76_SOYBN | 2.00E-53 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G32810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00867 | 44452 | 46593 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000867s00025583.1 | PF09360.5 | zf-CDGSH | 134 | 158 | 6.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.633 |
| SRR1783600 | control | 13.830 |
| SRR1783602 | moderate drought stress | 6.315 |
| SRR1811619 | moderate drought stress | 6.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.829 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.805 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.188 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 137.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 136.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.445 |
| SRR2868004 | Drought Stress (root) | 19.678 |
| SRR2967015 | Control (root) | 13.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 159.472 |
| SRR9715740 | Leaf | 210.312 |
| SRR9715741 | Leaf | 106.214 |
| SRR9715739 | Root | 4.167 |
| SRR9715742 | Root | 6.649 |
| SRR9715743 | Root | 6.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.109 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.098 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.638 |
| SRR8400027 | Control - Root | 52.065 |