Gene detail

Gene detail information of Glyur000867s00025581

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62200.1	3.00E-43	Embryo-specific protein 3, (ATS3)
NR	XP_004506291.1	1.43E-103	PREDICTED: uncharacterized protein LOC101503975 [Cicer arietinum]
trEMBL	tr\|I3SJT1\|I3SJT1_MEDTR	6.00E-101	Uncharacterized protein {ECO:0000313\|EMBL:AFK40523.1}

Sequence

Transcript Sequence

>Glyur000867s00025581.1
CTACATCACATTTTTTGACCACAAAAAAAAAAACTACATCACATTTTACCCTTCAAAAATCCTTCATCGTTGGTAGCGTTTTTGGCCTATACCTACCCACATCGATGTCGTGATGCATATAAATACCATTACTTAGTGACCCTGCTACTTCCAACTTAGCACCACCCCATAAGAAAAAATTTGAACTTTGACCATATTTCTAGAACCCACTCTACTCTACTTTTTCTGCTATCTCTTTTCTTTTTCTTTTTTTTTCATTTTTAAGTTGGGTTGAAGATTCTGAGGAAGATGATGATCAAACAGGTTTTTCTTGTGCTCTGTTTTGCCTCTGCACTTACCCTTTCAGTTTCTGAGTCTTCAAAATCTGATTCTCTGCAACCTCATGCTGTAGAGTCCTTCGATGTTGGGTATATCCAGATGAAGGGCGCACAAAACTGTTCTTATCTGGTAACAATAACTACAAGTTGTTCTTCACCCAAGTTTACTAAGGATGAGGTCAGTATTGTCTTTGGGGATGCTCATGGCAACCAGGTATATGCACCAAGATTGGATGATCCAATTTCAAGGACATTTGAGCAATGCTCNTCAGATTCATTTCAAATAGATGGTGAATGTGCATCACCCATTTGTTTTGTGTATCTATATAGATCAGGTTCAGAAGAAGATGGTTGGAAGCCTGAAAGTGTGAAAATCTATGGCTACAACTCAGAGCCTGTTACATTCACTTTCAACCACACCATCCCTAGTGACACGTGGTATGGCTACAATTTGTGTGACACACCAACTCCAACTCCTCCTTCTTCTTCTAACCAATTACCTATTCACAAATGGCTTCTCCTTATTATGGCTCTACTACTAGGATCTGTTTTTAGTAGTATTTGGCTGTAATGTAATTTTGTGCACTTAGATATTTAGATTTTCTACTATATATATCTCCTTTTTCATATTGACACTAAATTATTACTAGTACTTTATGTNGAAATTGGGGGATATGAGATTTGTAAAACCGTTAACTTTTATGTGATTTGTAGTTTGAGAATTTATATGTAGGGAAGGCCAANGGGTTTGATATAGATGGTCGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00867	36230	39057	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000867s00025581.1	PF06232.6	ATS3	44	162	2.20E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	69.999
SRR1783600	control	69.022
SRR1783602	moderate drought stress	42.793
SRR1811619	moderate drought stress	43.218

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.444
DRR006520	Root Summer glycyrrhizin high producing strain	53.109
DRR006521	Root Winter glycyrrhizin high producing strain	54.078
DRR006522	Root Winter glycyrrhizin high producing strain	52.467
DRR006523	Root Summer glycyrrhizin low producing strain	18.734
DRR006524	Root Summer glycyrrhizin low producing strain	18.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.636

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	117.663
SRR2868004	Drought Stress (root)	58.705
SRR2967015	Control (root)	47.689

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.211
SRR9715740	Leaf	80.984
SRR9715741	Leaf	47.742
SRR9715739	Root	267.513
SRR9715742	Root	248.714
SRR9715743	Root	255.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.439
SRR8749028	MeJA induced 9h	34.365
SRR8749029	MeJA induced 9h	23.929
SRR8749030	Uninduced	86.454
SRR8749031	Uninduced	25.934
SRR8749032	Uninduced	24.830

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	193.025
SRR8400027	Control - Root	134.990