Gene detail information of Glyur000866s00031719 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G40390.1 | 4.00E-12 | DNAse I-like superfamily protein |
| NR | XP_010059042.1 | 1.06E-50 | PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis] |
| trEMBL | tr|J7G2Z7|J7G2Z7_ROSRU | 8.00E-36 | Non-ltr retroelement reverse transcriptase {ECO:0000313|EMBL:AFP55574.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00866 | 93273 | 94028 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000866s00031719.1 | PF03372.18 | Exo_endo_phos | 11 | 188 | 2.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.873 |
| SRR1783600 | control | 12.856 |
| SRR1783602 | moderate drought stress | 10.447 |
| SRR1811619 | moderate drought stress | 11.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.419 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.725 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.445 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.364 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.590 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.790 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.683 |
| SRR2868004 | Drought Stress (root) | 7.488 |
| SRR2967015 | Control (root) | 5.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.061 |
| SRR8749028 | MeJA induced 9h | 14.621 |
| SRR8749029 | MeJA induced 9h | 10.102 |
| SRR8749030 | Uninduced | 12.532 |
| SRR8749031 | Uninduced | 20.431 |
| SRR8749032 | Uninduced | 11.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.033 |