Gene detail information of Glyur000866s00031706 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46700.1 | 4.00E-76 | Tetraspanin family protein |
| NR | XP_004300405.1 | 1.39E-136 | PREDICTED: protein TORNADO 2-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q9FIQ5|TRN2_ARATH | 6.00E-114 | Protein TORNADO 2 |
| trEMBL | tr|A0A059C0N0|A0A059C0N0_EUCGR | 3.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:KCW71781.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00866 | 2968 | 4723 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000866s00031706.1 | PF00335.15 | Tetraspannin | 37 | 226 | 1.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.612 |
| SRR1783600 | control | 46.206 |
| SRR1783602 | moderate drought stress | 8.807 |
| SRR1811619 | moderate drought stress | 9.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.201 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.103 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.691 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.596 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.688 |
| SRR2868004 | Drought Stress (root) | 2.665 |
| SRR2967015 | Control (root) | 4.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.603 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.220 |
| SRR9715739 | Root | 35.750 |
| SRR9715742 | Root | 8.425 |
| SRR9715743 | Root | 15.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.300 |
| SRR8749028 | MeJA induced 9h | 0.496 |
| SRR8749029 | MeJA induced 9h | 1.624 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.933 |
| SRR8400027 | Control - Root | 42.320 |