Gene detail information of Glyur000865s00029161 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18720.1 | 3.00E-69 | Protein of unknown function (DUF962) |
| NR | AFK35600.1 | 2.07E-118 | unknown [Lotus japonicus] |
| COG | YP_001838810.1 | 2.00E-15 | hypothetical protein LEPBI_I1426 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| trEMBL | tr|I3S5Q8|I3S5Q8_LOTJA | 8.00E-119 | Uncharacterized protein {ECO:0000313|EMBL:AFK35600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00865 | 101785 | 109568 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000865s00029161.1 | PF06127.6 | DUF962 | 108 | 269 | 3.70E-31 |
| Glyur000865s00029161.2 | PF06127.6 | DUF962 | 8 | 149 | 9.70E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.892 |
| SRR1783600 | control | 1.663 |
| SRR1783602 | moderate drought stress | 2.486 |
| SRR1811619 | moderate drought stress | 2.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.619 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.049 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.602 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.194 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.595 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.491 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.916 |
| SRR2868004 | Drought Stress (root) | 10.064 |
| SRR2967015 | Control (root) | 11.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.210 |
| SRR9715740 | Leaf | 23.387 |
| SRR9715741 | Leaf | 21.133 |
| SRR9715739 | Root | 3.589 |
| SRR9715742 | Root | 4.798 |
| SRR9715743 | Root | 6.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.529 |
| SRR8749028 | MeJA induced 9h | 2.835 |
| SRR8749029 | MeJA induced 9h | 2.700 |
| SRR8749030 | Uninduced | 4.996 |
| SRR8749031 | Uninduced | 4.736 |
| SRR8749032 | Uninduced | 5.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.646 |
| SRR8400027 | Control - Root | 12.151 |