Gene detail

Gene detail information of Glyur000864s00030257

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05830.1	4.00E-21	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_003544142.1	3.72E-56	PREDICTED: uncharacterized protein LOC100818979 [Glycine max]
trEMBL	tr\|I1M800\|I1M800_SOYBN	1.00E-56	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G06880.1}

Sequence

Transcript Sequence

>Glyur000864s00030257.1
AACTTCCTTCTCAACAATGCTCATTTTTCCTTTCCCTTTCCCTTCTTCCTTTCCTTGCATTTTCTGCTCCCTTGATTTGGCGTGGCANCCCACAGTAGAAACACACCGTATTCTCGTCAAGAGAGAGGAAAGAAAAAGTTCTAGGTGGGACCCACTTATCTCACAACTCATTAGACCATGTCACCTCACTCACCATGACCCGTGTTGAAGAAGAATCTCTCACTGTTTTAAGGTTTCTTTTGCTTGTAATCACGGTATGGACATGAACATGGACATGCATAAAACAACACATTAATTAAAAACTATACCTTGAGACACACACACAGTTAGATTTTCAATAACCCTTTTCTTTTTTACACACAAACAAACAAAACAAAACAAATAGGGGTTGATTTTTTTTTTCCCCCATCAGATCACTGCATAATTCATAATGCTGTTTCTTTTACATAACATCTTTTGTTGATNCATATCTCTCTCTCTCTTCCCCTCTGTCAGGGACTCAGAAGAGAGAGATTCATCAACCTACCACCACACTAGAGTAATACGGTAATACCCCTCACACAATTCACATCACCCCTTTTGCTTCTCCTCTGCTAAGGTTCAGAAAAACTCAAACTTTCTTCTTCAAAACTTGGTGGGGTGGTGGGGTATTAATGATCTTTTGCCTCTTTGAGTCATTACATGAAGATTCTCAACTTGGGTGTTCAAAATGCTGATCACTGAGGATAAGTTTCATGTTGCTGTGGACATAGACAATGGCTGTCACCGGAGCTCCGCCGCCGGTGACCGGTCAGATGAGGATCAACAAGGGTCNTCNCCGGATTCCGGCACAGAGATTGTNGGNGTGTCTGAGAAACANAGAGGATCCTCTGCATCAGAGTGTTCTGTGGANGTGGATCTGGATGATGGTGGTGCANTAGTGGTCCCTGATGTTAAGGTACATTTGGCTAAGGTGGAGAGGGATTGTAGGATTTGCCACCTCAGCATGGATATGACCAACCATGAATCTGGGACTCCCATTGAGCTGGGGTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAATGAATTAGGGGGGCAAAGCATCTCAGAAACTGAAAGTCTTGGAAAATGAACTTGTGAAATATGTGGATCAATTGCACACAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAGTGGAATGAGGCAAGTGATCCCTCCATGGTACCACCACCAACTGGACCTGTGCCCCCTGCAGAAACTCGGAATTTTTGGCAGGGACACCGATTTTTGAATTTCCTGCTAGCCTGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTCCACTTCAATGTTCCCTCTTGAATTCCTGTGTAATGTAACTTGAGGATGAAGCAGGTAAGATGATAGAGGGTTATTACTATTAGACCAACCTATTATGGNCCCATTACACACAGGTATCAAACTCAATACACTGTGTCTCCATAATAGTTGATTGGTGTTGGAGCTGTGTCTTGTCTTTTCTTTACATATATGATGCTCATATATGTATTTTTGCTGTATTATTGTTTATCTTGTTTTTGTTCAACCTAGAATAGTATCACGGATGGTTATCTTCATTTCCTTATTTGATTTTGTATATCATTGTATTGTAGTTCTTCTCTCTCCATCATGTAGAAATTGTATTGTTGGAATGGTTATACATGTGATGCGAGACATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00864	74555	79159	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000864s00030257.1	PF12906.2	RINGv	86	132	1.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.248
SRR1783600	control	15.406
SRR1783602	moderate drought stress	7.909
SRR1811619	moderate drought stress	7.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.367
DRR006520	Root Summer glycyrrhizin high producing strain	35.087
DRR006521	Root Winter glycyrrhizin high producing strain	10.433
DRR006522	Root Winter glycyrrhizin high producing strain	10.284
DRR006523	Root Summer glycyrrhizin low producing strain	14.279
DRR006524	Root Summer glycyrrhizin low producing strain	13.815
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.526
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.482

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.314
SRR2868004	Drought Stress (root)	10.935
SRR2967015	Control (root)	16.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.960
SRR9715740	Leaf	0.344
SRR9715741	Leaf	0.169
SRR9715739	Root	33.927
SRR9715742	Root	15.957
SRR9715743	Root	17.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.298
SRR8749028	MeJA induced 9h	3.582
SRR8749029	MeJA induced 9h	5.692
SRR8749030	Uninduced	0.177
SRR8749031	Uninduced	0.116
SRR8749032	Uninduced	0.785

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.416
SRR8400027	Control - Root	60.223