Gene detail information of Glyur000864s00030253 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59720.1 | 4.00E-47 | heat shock protein 18.2 |
| NR | XP_003519372.1 | 8.30E-92 | PREDICTED: 18.2 kDa class I heat shock protein [Glycine max] |
| COG | YP_005887446.1 | 1.00E-26 | heat shock protein Hsp20 [Marinobacter adhaerens HP15] |
| Swissprot | tr|P27880|HSP12_MEDSA | 7.00E-89 | 18.2 kDa class I heat shock protein |
| trEMBL | tr|C6T1V2|C6T1V2_SOYBN | 8.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00864 | 54008 | 54505 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000864s00030253.1 | PF00011.16 | HSP20 | 61 | 164 | 4.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.183 |
| SRR1783600 | control | 50.595 |
| SRR1783602 | moderate drought stress | 101.035 |
| SRR1811619 | moderate drought stress | 97.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 128.262 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 120.634 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 306.243 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 290.934 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 139.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 139.208 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.036 |
| SRR2868004 | Drought Stress (root) | 14.269 |
| SRR2967015 | Control (root) | 26.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.859 |
| SRR9715740 | Leaf | 3.840 |
| SRR9715741 | Leaf | 2.955 |
| SRR9715739 | Root | 33.599 |
| SRR9715742 | Root | 49.370 |
| SRR9715743 | Root | 39.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.100 |
| SRR8749028 | MeJA induced 9h | 5.868 |
| SRR8749029 | MeJA induced 9h | 7.823 |
| SRR8749030 | Uninduced | 5.769 |
| SRR8749031 | Uninduced | 5.200 |
| SRR8749032 | Uninduced | 8.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.959 |
| SRR8400027 | Control - Root | 70.871 |