Gene detail

Gene detail information of Glyur000864s00030252

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29500.1	2.00E-38	HSP20-like chaperones superfamily protein
NR	XP_009599505.1	6.83E-61	PREDICTED: 17.6 kDa class I heat shock protein-like [Nicotiana tomentosiformis]
COG	YP_005887446.1	2.00E-21	heat shock protein Hsp20 [Marinobacter adhaerens HP15]
Swissprot	tr\|P04793\|HSP13_SOYBN	1.00E-58	17.5 kDa class I heat shock protein
trEMBL	tr\|E2ESP3\|E2ESP3_TOBAC	3.00E-61	Cytosolic class I small heat shock protein 3A {ECO:0000313\|EMBL:ADK36667.1}

Sequence

Transcript Sequence

>Glyur000864s00030252.1
ATGGCGACGTTTGGTGGTGGTGTGTGGCGTGGACTGGAAGGAGACAGAGGGGGCGCACCGGACGTACCGGGACTGAAGAAGGAGGAAGTGAAGGTGGAGATCGAGAAGGGGAAGATCCTCCACATCAGCGGCGAGAGGAAACGCGACGCCGACGATCACATGGATGACACGTGGCACTTCGAGGAGCGCAGCGTCGGGAAGTTCCATCGGAAGTTCGAGCTCCCAGAGAATGCCAACGTCGAAGAGGTGAAGGCGGCTTTCATGGAGGACGGGGTTGTCACCATCACCGTGCCTAAGAAAGACATGGCCCACATGAGAGATTTGAATGGACTTGACTTCAGGCTTCTTCTCTTCCTCCTTAGGAACAGTAACAGTAAGAACCCCATTCTCCATNGCAGCCTTAACCTGATCCATTTTAGCATTCTCAGGGAGCCTAAACCGCCTCATGAATTTCCCCGAGCTTCTCTCAACGCGATGCCACCTGTCATCCTTCTGTTCCTGCTCTCTGCTCCTCTCACCGCTTATCTGCAGCACCCTCCCATCTTCAACCTCGACCTTCACCTCTTCCTTCTTCATCCCCGGAAGGTCCACGTTGAACACGTGTGCCTCTGGTGTCTCCCTCCAGTCCACGCGCGTGTTGGCGATTGCACTTGTCTCGCGTGCAGCAGAGGAATTGATCAGAGCGTTGAGAATGGAAACCCTTCGAATGGGTCCCATACGTCTAAGGAGAATGGGTCGAAGATGTTGCTTCGCCGACCGCTAAAGAGACTTGGAACCAGAGACATGGANTTCCCCTTGGCGACTACGGGAGGAACAGGCACCGAGACGGCGTCGTTTGCGAACGCGAGAATTGACTGGAAGGAGACACNGGAGGCACACGTGTTCAAGGCGGATCTACCTGGGGTGAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGAAGGTCGTGTGCTGCAGATAAGCGGAGAGAGGTCGAGGGAGAAGGAGGACAAGAACGACACGTGGCACCGTGTGGAGCGTAGCCAGGGGAGGTTCCTCCGCCGTTTCAGGCTGCCGGAGAATGCCAAGGTGGATCAGGTTAAGGCCGCATTGGAGAACGGGGTGCTTACCGTTACTGTTCCCAAGGAGCATGTTAAGAAGCCCGATGTTAAGCCCGTTCAGATCACTGGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00864	50515	60917	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000864s00030252.1	PF00011.16	HSP20	21	102	4.00E-22
Glyur000864s00030252.1	PF00011.16	HSP20	285	388	1.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.481
SRR1783600	control	47.352
SRR1783602	moderate drought stress	65.616
SRR1811619	moderate drought stress	67.248

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.440
DRR006520	Root Summer glycyrrhizin high producing strain	42.929
DRR006521	Root Winter glycyrrhizin high producing strain	39.419
DRR006522	Root Winter glycyrrhizin high producing strain	43.979
DRR006523	Root Summer glycyrrhizin low producing strain	24.189
DRR006524	Root Summer glycyrrhizin low producing strain	25.484
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.476

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.564
SRR2868004	Drought Stress (root)	5.096
SRR2967015	Control (root)	2.533

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.280
SRR9715740	Leaf	4.067
SRR9715741	Leaf	1.592
SRR9715739	Root	10.422
SRR9715742	Root	17.258
SRR9715743	Root	14.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.846
SRR8749028	MeJA induced 9h	0.817
SRR8749029	MeJA induced 9h	2.147
SRR8749030	Uninduced	0.286
SRR8749031	Uninduced	0.103
SRR8749032	Uninduced	0.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	72.269
SRR8400027	Control - Root	73.754