Gene detail

Gene detail information of Glyur000863s00037668

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15750.1	2.00E-87	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
NR	XP_003536456.1	3.80E-126	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max]
COG	YP_004782078.1	5.00E-12	30S ribosomal protein S4 [Pyrolobus fumarii 1A]
Swissprot	tr\|Q9FLF0\|RS92_ARATH	2.00E-08	40S ribosomal protein S9-2
trEMBL	tr\|C6TBL4\|C6TBL4_SOYBN	1.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G37720.1}

Sequence

Transcript Sequence

>Glyur000863s00037668.1
GCCTAAATCACATCTCAGTTCTTTCCCTTTGAGTGACCCAGCCTTTCACGCCTCATTTCCGTTCTCTTACTCCTTGTTATTCCCTGTTATTGCTCGTTTCTCTCTGAAAATTGCCCCGCCCTCGTAGATCACCACCGAGCTTTTCTTTCTCTCTGCCTCCCTCAAAGATCACCACCAAAGTTTAAACATTTCTTTCTCTCTGCCTCTCAAGCCTTTCGCCCTCATCCCTCTCCCTCTCCCCCAACCGATCGCCCCCTCACCCCTCTTCCTCTCCTCCGCAGTTGGTTTGGTCGGTGTTCTTCGTCTTGGTGCGGGTGACGCACATTCAGGTCGGTAAGGAAAAGGTTGCGTTGGAGAGGGTCTTAGATCTAAAAAGTGAAAAACAATGAGGAAGCTAAAGTTTCATGAGCAGAAGCTTTTGAAGAAGGTCAATTTTTTGGAATGGAAGAGAGAAAGGGGTCACAGAGAGAACATGGTTATGCAGCGCTACCATGTTACTGGACGGGATGATTACAAAAAATATTCAGGTTTATGCTGTATGGTTCAAAAGTTGGTAAACATGCTGAAACAGATGGACCCAAAGGATCCTTTTCGAATTGATATGACTGATAAGCTTTTGGAAAAGCTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACANTATGCGAACGCTTAACTGTGTCATCCTTCTGTAGACGTAGGCTCTCAACGGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTGACGTATATTGAGCAGGGGCATGTACGGGTTGGTCCAGAGACAGTCACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAGGACTTCATTACATGGGTGGATTCGTCCAAGATAAAGAGAAAAGTGCTCCAGTACAATGACAAGTTGGATGACTATGATTTGATGAATTAAAGTGGAAGTGTTGGCTTATTATTGTGGTTTGCTATGAACGATTTATTGTAGACTGTGTATGAATTAAGACTATTCAAAATCGTGGATGAGTTTATTGTAGTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00863	69130	76648	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003723 RNA binding

GO:0019843 rRNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000863s00037668.1	PF00163.14	Ribosomal_S4	4	94	6.10E-08
Glyur000863s00037668.1	PF01479.20	S4	107	153	1.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.206
SRR1783600	control	38.538
SRR1783602	moderate drought stress	9.276
SRR1811619	moderate drought stress	9.561

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.787
DRR006520	Root Summer glycyrrhizin high producing strain	19.568
DRR006521	Root Winter glycyrrhizin high producing strain	16.896
DRR006522	Root Winter glycyrrhizin high producing strain	16.495
DRR006523	Root Summer glycyrrhizin low producing strain	45.950
DRR006524	Root Summer glycyrrhizin low producing strain	44.887
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.365
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.274

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.373
SRR2868004	Drought Stress (root)	35.925
SRR2967015	Control (root)	43.165

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.541
SRR9715740	Leaf	21.761
SRR9715741	Leaf	14.960
SRR9715739	Root	16.185
SRR9715742	Root	14.207
SRR9715743	Root	14.997

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.046
SRR8749028	MeJA induced 9h	26.039
SRR8749029	MeJA induced 9h	45.791
SRR8749030	Uninduced	24.024
SRR8749031	Uninduced	18.747
SRR8749032	Uninduced	20.586

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.217
SRR8400027	Control - Root	30.608