Gene detail information of Glyur000862s00041450 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10080.1 | 6.00E-83 | RmlC-like cupins superfamily protein |
| NR | AFK37121.1 | 1.88E-139 | unknown [Lotus japonicus] |
| COG | YP_006983085.1 | 1.00E-06 | oxalate decarboxylase family bicupin [Gluconobacter oxydans H24] |
| Swissprot | tr|Q9SR72|GL32_ARATH | 8.00E-104 | Germin-like protein subfamily 3 member 2 (Precursor) |
| trEMBL | tr|I3SA29|I3SA29_LOTJA | 7.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:AFK37121.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00862 | 6907 | 7581 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000862s00041450.1 | PF00190.17 | Cupin_1 | 78 | 210 | 2.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.946 |
| SRR1783600 | control | 16.148 |
| SRR1783602 | moderate drought stress | 12.889 |
| SRR1811619 | moderate drought stress | 12.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.328 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.506 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.258 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.379 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.642 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 78.086 |
| SRR2868004 | Drought Stress (root) | 73.209 |
| SRR2967015 | Control (root) | 68.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.229 |
| SRR9715740 | Leaf | 1.904 |
| SRR9715741 | Leaf | 1.890 |
| SRR9715739 | Root | 10.311 |
| SRR9715742 | Root | 25.976 |
| SRR9715743 | Root | 26.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.168 |
| SRR8749029 | MeJA induced 9h | 0.081 |
| SRR8749030 | Uninduced | 0.084 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.344 |
| SRR8400027 | Control - Root | 40.575 |