Gene detail information of Glyur000859s00026229 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25360.2 | 6.00E-156 | TRICHOME BIREFRINGENCE-LIKE 18 |
| NR | XP_004514981.1 | 0 | PREDICTED: uncharacterized protein LOC101511114 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8VYS5|TBL18_ARATH | 0 | Protein trichome birefringence-like 18 |
| trEMBL | tr|G7KNS1|G7KNS1_MEDTR | 0 | Trichome birefringence-like protein {ECO:0000313|EMBL:AES75905.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00859 | 82374 | 85180 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000859s00026229.1 | PF14416.1 | PMR5N | 202 | 255 | 8.20E-23 |
| Glyur000859s00026229.1 | PF13839.1 | PC-Esterase | 258 | 552 | 6.70E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.301 |
| SRR1783600 | control | 3.404 |
| SRR1783602 | moderate drought stress | 3.807 |
| SRR1811619 | moderate drought stress | 3.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.540 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.638 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.793 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.925 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.768 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.897 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.586 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.797 |
| SRR2868004 | Drought Stress (root) | 5.136 |
| SRR2967015 | Control (root) | 5.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.642 |
| SRR9715740 | Leaf | 5.349 |
| SRR9715741 | Leaf | 4.641 |
| SRR9715739 | Root | 2.575 |
| SRR9715742 | Root | 5.078 |
| SRR9715743 | Root | 4.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.312 |
| SRR8749028 | MeJA induced 9h | 2.002 |
| SRR8749029 | MeJA induced 9h | 0.872 |
| SRR8749030 | Uninduced | 0.830 |
| SRR8749031 | Uninduced | 0.091 |
| SRR8749032 | Uninduced | 0.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.476 |
| SRR8400027 | Control - Root | 6.305 |