Gene detail

Gene detail information of Glyur000859s00026225

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G51660.1	cleavage and polyadenylation specificity factor 160
NR	XP_003548242.1	PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max]
Swissprot	tr\|Q9FGR0\|CPSF1_ARATH	Cleavage and polyadenylation specificity factor subunit 1
trEMBL	tr\|I1MQ84\|I1MQ84_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G32890.1}

Sequence

Transcript Sequence

>Glyur000859s00026225.1
ATGAGTTTCGCGGCATACAAGATGATGCAATGGCCCACCGGAGTCGACAACTGCGCCGCCGGGTTCCTAACCCACTCCCGCTCCGACTTCGCCCCACGCGTCCCTCCCATCCAGCCCGACGACGACCTCGACTCCCCCGTGTGGGCCCCACAGCCACCCTGCGACCTCGGCCCTCTCCCCAACCTCGTCCTCACCGCCGCCAATATCCTCGAACTCTACATCGTCCGCCTCCAACAAGACAACCAGCCTAACAAGCCCTCCTCCGCCACTGCCGATCCCCGCCGCGCTTCCCTCCTTGACGGCGTCTCNGGTGCCTCCCTTGAGCTCGTTTGCCATTACAGGTTACATGGCAATGTNGAAAGCATGGCTGTGTTGAGCATTNGGGGTGGTGATGCTTCTAGGAGGAGAGATTCTATCATCTTAACTTTTAAAGATGCTAAAATTTCGGTTCTAGAGTATGATGATTCTATTCACGGACTCNGTACTAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGCAGAGAACAATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGNGGAGTTCTTGTCTTTGATTTGCAAATGATAATACTAAAGACTAGTCAGGCTGGTTCTGTTTTAGTTGGGGAGGATGATGCCTTGGGTTCTGGAGGTGCAGTTGCTGCTCGTATTGACTCATCTTATATGATAAATTTGCGTGACTTGGATATGAGGCATGTGAAAGATTTTACATTTGTTCATGGTTATATTGAACCTGTGATGGTGATCTTGCATGAACGTGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTTCCCCACGATGCCTACANGCTTCTTGCAGTGCCCTCGCCAATTGGTGGTGTTCTTGTAATTGGTGCAAACACTATTCATTATCACAGTCAGTCTGCTTCATGTGCATTGGCCTTGAACAGCTATGCTGTTTCGCTTGATAGTAGTCAGGAGATGCCAAGATCAAGTTTCAATGTGGAACTTGATGCGGCCAATGCAACTTGGTTGTTGAGTGATGTGGCGTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACTCTTATTTATGATGGAAGGGTTGTGCAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTATCATCTGGTATTACGACAATTGGAAATTCTCTGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTGTCTCAACGTTGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGTAGATGCTCCTTCACCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTACANGATATGGTTAGTGGTGAGGAGCTCTCCTTGTACGGATCTGCTCCAAATAGAACTGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCGTTGATTAATGTTGGTCCTTTGAAAGATTTCTCGTACGGTTTAAGAATTAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGTTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTTCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGATCTTCCTGAATTTTCAGGCTGCAAAGGAATTTGGACTGTTTATCATAAGAGCANTCGATCTCTTAATGCTGACTCTTCTAAGCTAGCTGATGATGATGATGAGTATCATGCTTACCTTATTATAAGTTTGGAGGCTCGTACTATGGTACTAGAAACGGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGGCGTCGAGTTATTCAAGTCTATGAACGCGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATATAAGCTTTGGAGCTTCTAACTCAGAATCTAATCATGGNTCTGAGAGTGCTTTAGCACTATCCGTTTCTATAGCTGATCCATATGTCTTGCTCAGAATGAGTGATGGAAGTATTAGACTTTTGATTGGAGATCCTAGTACCTGCACCATTTCTGTCACTTCTCCCGCTTCGTTTGAGAGCTCAAAAGGGTCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCTGAGCCATGGCTAAGGAAGACAAGTACCGACGCATGGCTTTCTACTGGTGTTGGTGAGGCCATTGATGGCACTGATGGTGCAGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTATGAAAATGGTAACCTTGAAATATTTGATGTTCCCAATTTTGGTTGTGTTTTTTCGGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTGCCAAAAGATTCTCAAAAGGGGGATGGTGGTTCTGATGGAGTGGTCAACCAAGGCAGGAAGGAAAATGTACTAAATATGAAGGTNGTGGAGTTGGCCATGCACAGATGGTCAGGGAAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACAATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGTACTTCTAAGGTTGAGGATTCAGTATCAGCTGTAGGGCCTGTTGGCCGTGGCAATACTAGTGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTTCCNTTGGATGCACATGCCAGGGAGGAGGCATCAAATGGATCACCTTGTAAACAAATTACTATTTTCAAGAATATTGGTACTTATGAAGGATTCTTCCTTTTGGGGTCTAGACCGGCTTGGGTTATGGTGTTGAGAGAACGACTTCGTGTTCATCCACAGCTATGTGATGGATCTATTCTTGCTTTTACTGTCCTTCACAATGTAAATTGCAATCACGGCCTCATATATGTTACATCACAGGGTGTTTTAAAGATATGCCAATTACCTTCTGGCTCAAACTATGACTGTTACTGGCCTGTACAGAAAATTCCACTAAAAGCCACTCCACATCAAGTGACTTACTTTGCAGAGAAGAATTTGTATCCACTTATTGTATCATTTCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTTTGGTTGACCAAGATGCCAACCATCAGACCGAGAGTCAGAATTTGAATTCTGATGAGCAAAACCGCTTTTATACCATGGATGAATTTGAGGTCCGTATCATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCAGAAAATGCTCTCACTGTGAGGATGGTTACTCTGATGAATACAACCTCAAAAGAAAACGAAACACTTTTAGCCATTGGTACTGCTTANGCGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATTCTCCTGTTCTCTTTGGGGAAAAATACTGATAGTCCACAAACTCTGGCTTCAGAGGTGTACTCGAAGGAATTGAAAGGTGCTATATCTGCCTTGGCTTCACTTCAGGGTCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCANAAATGGACTGGCACCGAGTTGAACGGTATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGAGACATCCACAAAAGCATATATTTTCTTAGTTGGAAAGAGCAGGGTGCTCAACTTAGCTTATTAGCAAAGGATTTTGGTTCTCTTGATTGTTTTTCCACAGAATTTTTGATTGATGGAAGTACCCTGAGTCTCCTTGTTTCAGATGATCAAAAAAATATCCAGATTTTTTACTATGCACCGAAGATGTCAGAGAGCTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAGTTTCATGTTGGGGCCCATGNGACTAAATTCTTAAGGTTGCAGATGCTATCCACTTCTGAACGAGCTGGTTCCGGTCCCGGCTCAGACAAAACCAATCGTTTCGCCTTATTATTTGGTACTTTGGATGGTAGCATTGGTTGCATTGCTCCTCTTGATGAAATCACATTTCGAAGACTGCAATCCTTGCAGAGAAAGCTTGTTGATGCTGTACCCCATGTTGCTGGCCTAAATCCGAAAGCTTTCAGACAGTTCCGTTCAAATGGAAAGGCGCATCGGCCTGGCCCGGACAGTATAGTTGACTGCGAGCTGCTTTGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCAACAGGTTGGAACAACTCGATCACAAGTTCTCACAAACCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTTAAATTGTCTCCTCCTTCAACCTGGAGCCATCGAGTTATGCTCTTCTAGACCTAAATTTGCAAATGGGACGAGGTGGATGGATCTAGAGAAGCTAGTAGGAAAACTGAACTCATTAGAAGCTCGGATATTCTTTTCTATCAAAATTTGA

Protein Sequence

>Glyur000859s00026225.1
MSFAAYKMMQWPTGVDNCAAGFLTHSRSDFAPRVPPIQPDDDLDSPVWAPQPPCDLGPLPNLVLTAANILELYIVRLQQDNQPNKPSSATADPRRASLLDGVSGASLELVCHYRLHGNVESMAVLSIXGGDASRRRDSIILTFKDAKISVLEYDDSIHGLXTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLVFDLQMIILKTSQAGSVLVGEDDALGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYXLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDSSQEMPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSTLSSNLKEEVGDIEVDAPSPKRLRRSPSDALXDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVDLPEFSGCKGIWTVYHKSXRSLNADSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDISFGASNSESNHGSESALALSVSIADPYVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCYENGNLEIFDVPNFGCVFSVENFMSGKSHLVDALMKEVPKDSQKGDGGSDGVVNQGRKENVLNMKVVELAMHRWSGKHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSAVGPVGRGNTSVSRLRNLRFVRVPLDAHAREEASNGSPCKQITIFKNIGTYEGFFLLGSRPAWVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDCYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDANHQTESQNLNSDEQNRFYTMDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLMNTTSKENETLLAIGTAXAQGEDVAARGRILLFSLGKNTDSPQTLASEVYSKELKGAISALASLQGHLLIASGPKIILXKWTGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFSTEFLIDGSTLSLLVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHXTKFLRLQMLSTSERAGSGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPKAFRQFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAQQVGTTRSQVLTNLSDLSLGTSFLLNCLLLQPGAIELCSSRPKFANGTRWMDLEKLVGKLNSLEARIFFSIKI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00859	41405	63970	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000859s00026225.1	PF10433.4	MMS1_N	279	680	1.30E-21
Glyur000859s00026225.1	PF03178.10	CPSF_A	1096	1428	1.30E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.657
SRR1783600	control	4.689
SRR1783602	moderate drought stress	5.649
SRR1811619	moderate drought stress	5.539

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.896
DRR006520	Root Summer glycyrrhizin high producing strain	5.759
DRR006521	Root Winter glycyrrhizin high producing strain	5.175
DRR006522	Root Winter glycyrrhizin high producing strain	5.107
DRR006523	Root Summer glycyrrhizin low producing strain	6.831
DRR006524	Root Summer glycyrrhizin low producing strain	7.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.455
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.446

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.228
SRR2868004	Drought Stress (root)	13.915
SRR2967015	Control (root)	15.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.227
SRR9715740	Leaf	3.580
SRR9715741	Leaf	4.021
SRR9715739	Root	2.373
SRR9715742	Root	7.431
SRR9715743	Root	7.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.992
SRR8749028	MeJA induced 9h	12.888
SRR8749029	MeJA induced 9h	7.405
SRR8749030	Uninduced	3.550
SRR8749031	Uninduced	3.791
SRR8749032	Uninduced	2.934

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.913
SRR8400027	Control - Root	13.285