Gene detail

Gene detail information of Glyur000859s00026223

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52500.1	1.00E-130	Eukaryotic aspartyl protease family protein
NR	XP_007145803.1	0	hypothetical protein PHAVU_007G269300g [Phaseolus vulgaris]
Swissprot	tr\|Q766C2\|NEP2_NEPGR	5.00E-45	Aspartic proteinase nepenthesin-2 (Precursor)
trEMBL	tr\|V7BIS8\|V7BIS8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17797.1}

Sequence

Transcript Sequence

>Glyur000859s00026223.1
ATGACTTCTCCCCACATTTTCTGTCTACTCTGTCTCCTCTCCATCATCACCTTCACTTCCTCTTCATCCTCATCATCACCCAACACCATTACCATTCCTATTTCTCCCTTATTCACCAAACACCCTTCCTCAGATCCATTTCATACCCTCAAACTCGTGTCCTCTGCTTCAATCACCAGAGCACACCATCTCAAGCAACACCACAAAAAGAAACCATCTTTCACCAATTCACCCCCTCAACTTCAAATCAAGACGCCGATTCATCCCAAGAGTTATGGAGGATACTCCATCGACCTCAAATTCGGAACCCCACCACAAACCTTCCCTTTCGTTTTCGACACAGGAAGCAGCCTCGTGTGGCTCCCTTGTTCCTCTCACTACCTCTGTTCCAAATGTAACTCCTTCCCCAANATAACAAAAANCCCAAAGTTCATTCCCAAAGATTCCACCTCTTCCAAGTTCATAGGTTGTAAGAACCCAAAATGCGCTTGGGTTTTCGGACCCAACGTTNTTCAATCCCGTTGTGNCCAAGAATGCAAAACAAAANNCTGTTCCCAAATTTGCCCCGCTTACACGATCCAGTACGGAATGGGTTCAACTGCGGGTTTCTTACTCTCGGAAAATCTCAATTTTCCGGGNAAAATCGTCCCCGATTTTCTCGTCGGTTGCTCCGTCGTTTCAATTTACCAACCCGCCGGAATCGCCGGGTTTGGTCGAGGGCCAGAGTCGGTGCCGTCGCAGATGAAGCTTAAGAGATTCTCCTTCTGCTTGGTTTCTCACCGGTTCGACGACTCGCCGGAGAACAGTGACCTCGTCTTGTATGACTCTTCCGGCGACGGTAACGGTCTCAGCTACACGAAATTCCAGAAAAACCCTCTGTCAGAGAACCCGGCGCTGAGGACTTACTACTACGTGACGCTAAGGAAAATCATCGTCGGCGGGAAAAGCGTGAGGGTTCCGAGGAGGTTTTTTGAGCCGGATTCTAAGGGTAACGGTGGGTCCATAGTGGACTCTGGGTCCACCTTCACGTTCATGGAGAGGCCNATTTACGATTTGGTGGCCCAAGAGTTCGAGAAGCAGGTTGTTAATTACACGAGGGTTAGGGACGCNGAGGAGCGATCNGGGTTGAGTCCCTGTTTCAATGTGTCGTCGTCGNTGGGGATTGAAGCGGCGTCGTTTCCGAGTCTCGCTTTTCAGTTCAGGGGCGGTGCCAAGATGACGCTGCCACTCGCTAATTATTTCTCGTTTGTTGGGGAATCCGACGTGGCATGTTTGACNATCGTGTCTGATGACGTGGCCGGTCCAGGCGTTGCGGGTGGACCGGCTGTTATATTGGGAAATTATCAACAGCAAAATTTCTACGTGGAGTATGATTTGGAAAACGAGAGGTTTGGGTTTCGAAGTCAGAGTTGCAAGAAGAGTGTTGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00859	27631	29061	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004190 aspartic-type endopeptidase activity

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000859s00026223.1	PF14543.1	TAXi_N	95	269	3.20E-24
Glyur000859s00026223.1	PF14541.1	TAXi_C	302	467	1.90E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.841
SRR1783600	control	28.412
SRR1783602	moderate drought stress	16.687
SRR1811619	moderate drought stress	16.743

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.072
DRR006520	Root Summer glycyrrhizin high producing strain	10.751
DRR006521	Root Winter glycyrrhizin high producing strain	0.344
DRR006522	Root Winter glycyrrhizin high producing strain	0.342
DRR006523	Root Summer glycyrrhizin low producing strain	14.442
DRR006524	Root Summer glycyrrhizin low producing strain	14.119
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.699
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.842

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.189
SRR2868004	Drought Stress (root)	43.876
SRR2967015	Control (root)	31.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.313
SRR9715740	Leaf	4.033
SRR9715741	Leaf	3.070
SRR9715739	Root	12.119
SRR9715742	Root	36.787
SRR9715743	Root	30.970

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.316
SRR8749028	MeJA induced 9h	0.117
SRR8749029	MeJA induced 9h	0.094
SRR8749030	Uninduced	0.089
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.908
SRR8400027	Control - Root	7.018