Gene detail

Gene detail information of Glyur000858s00035412

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24120.1	5.00E-158	sigma factor E
NR	XP_003602198.1	0	RNA polymerase sigma factor rpoD [Medicago truncatula]
COG	YP_007128182.1	2.00E-36	RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9ZNX9\|SIGE_ARATH	0	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|G7J6R7\|G7J6R7_MEDTR	0	RNA polymerase sigma factor {ECO:0000313\|EMBL:AES72449.1}

Sequence

Transcript Sequence

>Glyur000858s00035412.1
TTCTCTAGTAGATTCTGTTCTGTGTGGATTCATTCATCGACTTGTGTCATAGATCAAATTCAAAGGATCTTGGCGTCGAAAATCGGTCATTTGAATCTCTTTCTAAACGCTGATTAGGCAACCTGGTATGGGAGTTGTCACTGTTTCTAGCTCAGCTGCTCGGACTCCACTAGGATTGAATACAAAGTTTTCAAGTCACCATCTTGCACTGAAGAGACCTTTAACCGTAGCATTCAAAGGAGATAAACAGAATGACACATCTGTGGTTGCGACTCGAGAGAAAATTCCTATGCACATTGAAACGGCCAAGACGCACAAGAAAAAGACGGCGAAAACTAATAAACTGCCTAAGAGAGTAAGAGTTGTCTCTACTGAGGAAATTTCTCCGTCTTCCTTCGATGTGGACTACAATGAAGCTGCTGCCATACTTGAAAATATATACAAACTCAGCCCGGCATCTGATACATGTGATGCAGAATATATAGATNGGAAGATCAAAAGAGTCTCTCGCCGGGGGAAGAAGATTGGCGATGGAAATAAAGAGGAGGAGCTAAACAATGATAGGGTGGTCAGAAGCCGGAAAACAAAAGCCAAACGATTGAATCTTGATGAGAGGATTGAATTACAAAAGAACAAAGAAGGGGAAGAAGTCATTCCAACTCGAAGANAAATAAATGTTAAGAATAGAATTGGGAAGATTGAGGAACTTGTTAGAGAATATTCAATATTAACTGATTTTGGCAGTTTGGACTGGAAAAAAATGAAAATACCTCCTGTTCTTCCCGCTTCGGAGCATGCTTTGTTGTTCAAGTTGATGCAACCTTTGAAGGCACTCTGTCAACTGAAAGAAGATTTACAGAAGGAGCTAGCAAGAGAACCTACAGAGGATGAAATAGCTGAGGCAACAAACATGCGCGTTGCTCAAGTGAAAAAAGCAATAGAGGTTGGTCAAGCTGCAAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTCTTGTTTGTGATCAATAGACATTTTCCAGATTTCGCCAATGGCCCAAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTCATAATAGCAATTGATCGTTTTGAGCCAAACAGGAGATTTCNGCTATCTACGTACAGTTTGTTTTGGATAAGGCATGCTATCATTCGTTCCCTGACCCTCTCAAGCTTCACGCGTGTTCCCTTTGGACTTGAATCGGTTAGAGCAGAGATCCAAAGAGCTAAAACTGAGTTAACATTTGAGCTTCAGAGGTCACCAACAATGGAAGAAATAATAGAAAGAGTTCAGATATCCCCTGAAAGATACCATGACGNGTTGAAGGCATCGAAACCCCTTCTTTCGCTGCATTCGAGACACATGACCACGCAAGAAGAGTTTATTAACGGGGTCGTTGATGAGGATGGTCTTGATTCCCTGAAGCCCAAGGAGAATTTGGTGATCAGACAGAGATTTGGACTTGATGGTAAGGGTGACAGAACGTTGGGAGAAATCGCTGCGAACTTGAACATTTCAAGGGAAATGGTGAGAAAGCATGAGGTCAAGGCTCTCATGAAGCTCAAGCATTCAGCTAGATTGGATTATCTTCGTCGCATTATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00858	60938	68248	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000858s00035412.1	PF04539.11	Sigma70_r3	238	276	1.20E-06
Glyur000858s00035412.1	PF04542.9	Sigma70_r2	281	348	6.90E-09
Glyur000858s00035412.1	PF04539.11	Sigma70_r3	366	427	3.50E-11
Glyur000858s00035412.1	PF04545.11	Sigma70_r4	432	484	2.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.503
SRR1783600	control	1.542
SRR1783602	moderate drought stress	4.046
SRR1811619	moderate drought stress	4.074

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.338
DRR006520	Root Summer glycyrrhizin high producing strain	8.482
DRR006521	Root Winter glycyrrhizin high producing strain	26.216
DRR006522	Root Winter glycyrrhizin high producing strain	25.849
DRR006523	Root Summer glycyrrhizin low producing strain	1.862
DRR006524	Root Summer glycyrrhizin low producing strain	1.899
DRR006525	Leaf Summer glycyrrhizin high producing strain	82.624
DRR006526	Leaf Summer glycyrrhizin high producing strain	81.875

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.594
SRR2868004	Drought Stress (root)	26.241
SRR2967015	Control (root)	20.061

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	111.346
SRR9715740	Leaf	179.339
SRR9715741	Leaf	137.217
SRR9715739	Root	0.767
SRR9715742	Root	3.601
SRR9715743	Root	3.395

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.419
SRR8749028	MeJA induced 9h	71.855
SRR8749029	MeJA induced 9h	22.451
SRR8749030	Uninduced	15.137
SRR8749031	Uninduced	19.361
SRR8749032	Uninduced	14.674

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.244
SRR8400027	Control - Root	10.993