Gene detail

Gene detail information of Glyur000857s00030694

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14080.1	1.00E-135	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004498363.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FMU2\|PP380_ARATH	9.00E-176	Pentatricopeptide repeat-containing protein At5g14080
trEMBL	tr\|I1MLF3\|I1MLF3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G05820.1}

Sequence

Transcript Sequence

>Glyur000857s00030694.1
ATGATGAAAGGTACTGGAGGAGAGTTGGCACTGGGAATAAGCAGGGCAGTGATCTCAGCCTCAAAGCAGCACAGCAAGGGAAAAGGAAAACATTGTTCATGGAGTGCACACGTNGAACAAACACTACACAACCTCAACCTAGGTAGTTGTCGTCGTCACCAACAGCAACAGCAACATTTGACTCTGACCCCATCACTGGTTGCCTCCGTGATCGACCCTTACCTCCTCAACCACCACTCCCTCGCTCTGGGCTTTTTCAATTGGGCCTCTCAACAACCGGGCTTCACCCACACCCCAACCACCTTCCACTCCATCCTCAAATCCCTCTCCNACTCTCACCACCACGCGCTTCAACTCCACTCCCTCTTTAAACGCGCCCAGTCACTCAACTTCCCCNTCCACCCTTCCGTTTTCCGTTCCGTTATAACCTCCCACCTTTCCCGCAACAACCCAAACCAAGCCTTTTCCCTCTTCAACGACGTCGTTTCCATTCTCCCGCAAATCGGGGGCCCCACATGNAACTCCCTCCTCGCCGCACTTGCCTCTAACGGGTGCATTCNCAGTGCACGCAAGGTGTTCGGTGAAATGACTGTTAGGGGCGTCCCTTTAAGTACGCTTGGCTTTGGTGTGTTCGCTTGGCGGGTTTGCAAGGAAGAGGGCAATTTGGGGAAATTGTTGGAGGAGGTTAGCGAATGTGAATGTGGTTCGGATATTAACGGTTCCGTTGTGGCGGTTATGGTTGTTCATGGATTGTGCCACGCTGGCAGGGTGTCGGAGGCATTGGTCATGCTGTCTGAATTGAGGAACATGGGATGGAAGCCTGATTTCGTGGCTTATTGGATTGTTGCCGCGGGGTTCCGAAAGATGGGGAATGTGGCTGATGAGGTTCACGTTTTGAAGATGAAGAGGAAGCTNGGTGTNGCTCCNAGAAGTAGGGATTATCATGGATTGATACTTGAATTGGTTTCAGAAAGGCTGATTCGCGAAGCCAAGGAGCTTGGCGAGGTTTTTGTTGGAGGTAGTTTCCCTCTTGAGGATGATGTTCTCAATGTGTTGATAGAATCAGTGTCTGCTATTGATCCATGTGCAGCTATTGTGTTTCTCAATTACATGGTTGAAAAAGAAAGGTTTCCAAGTATTTCAACGTTGAACAGGTTGTGTGGGAACCTGTGTAGCCATGGAAAGGTTGATGAATTGTTGGAGGTGTTNCGTGTTTTGGATTGTCGAGATTACTTCAAAGATGTGGAGGGTTACAATGTGATGGTGTCATGGTTGTGCAAGGCAGGGAGAGTGAAGGAAGGATATGCTGTTCTCCAGGAGATGAAGAAGAAAGGGCTTAGCCCCGATGTCACATCTTACAACTATGTCATGGAAGCGTGTTGCGAGGCAGATTTGCTGCGCCCTGCGAGGAAGCTCTGGGATGAGATGTTTTCGAGTGGCTGCTGCGGCAACTTGAGAACGTACAATATTTTGATAAGGAAGTTTTCGGAAGAGGGACAGATTGAAGAGGCTCAGATGCTGTTTCGCCGCATGCTGGACAAGGGAGTGGAGCCGGATAGTGCGAGTTACAGTTTTCTTTTGGAAGGACTCTGCCAAGAAGACAGGCTTGAAGCAGCTTTTGAGCTCTATAACAAGTCTGTCAAAGAGGACGCTATCCTTGCAANAGATGTATTGAGCTCGTTCATATCATCACTCTGCAAGAAAGGTATTNTTATCCTGATATTTGTAAAACTTAACATTTACATGCTGGGATGACATCTAATGGCTGCTTCCAAGTTTCTTTGCAGCCTCAATCATGATATAGCACATGCANAATCCCATGTGATTTTGTTGAAATGTTTGGCAGATGGAGGAGAGATTCCATTTGCTATTGAGCATTTGAGGAGGGTTCAGGATAAGTCACCTTCAATGCNACAAGATATATGTTCTGGACTTTTAGCTTCCCTTTCCTCTGCTACATGCCCAGAGCCAATATTACAGTTTCTTCAAAGAATACAAGGGACGACGAAAAGATTGAAAGAGCAGGACTCAGAGATAAAAGACCATTCTCTCAGTCCAGACAGCAATGGAATGACAGAAGCTTATAAGCATGCAGGGGATGCAGCTGGAGTTATGCAATGTTCACAGAAGATCATGTAGGACTCTCCTCTCAGATATCTCACAAGGATATTCCAAGAGAACAGTTTACGTATCAAAAGNGCAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00857	48485	51665	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000857s00030694.1	PF01535.15	PPR	174	201	0.0016
Glyur000857s00030694.1	PF01535.15	PPR	247	271	0.028
Glyur000857s00030694.1	PF13041.1	PPR_2	413	462	8.40E-16
Glyur000857s00030694.1	PF13041.1	PPR_2	487	532	1.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.590
SRR1783600	control	0.648
SRR1783602	moderate drought stress	1.388
SRR1811619	moderate drought stress	1.311

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.222
DRR006520	Root Summer glycyrrhizin high producing strain	1.017
DRR006521	Root Winter glycyrrhizin high producing strain	0.501
DRR006522	Root Winter glycyrrhizin high producing strain	0.374
DRR006523	Root Summer glycyrrhizin low producing strain	0.910
DRR006524	Root Summer glycyrrhizin low producing strain	1.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.712
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.565

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.109
SRR2868004	Drought Stress (root)	1.262
SRR2967015	Control (root)	1.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.320
SRR9715740	Leaf	0.384
SRR9715741	Leaf	0.465
SRR9715739	Root	0.326
SRR9715742	Root	0.658
SRR9715743	Root	0.476

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.038
SRR8749028	MeJA induced 9h	1.937
SRR8749029	MeJA induced 9h	1.435
SRR8749030	Uninduced	0.257
SRR8749031	Uninduced	0.081
SRR8749032	Uninduced	0.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.286
SRR8400027	Control - Root	2.884