Gene detail

Gene detail information of Glyur000856s00034993.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14720.1	4.00E-129	xyloglucan endotransglucosylase/hydrolase 28
NR	XP_003529235.1	0	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like isoform X1 [Glycine max]
COG	YP_003060495.1	6.00E-13	glycoside hydrolase family protein [Hirschia baltica ATCC 49814]
Swissprot	tr\|Q38909\|XTH28_ARATH	8.00E-164	Probable xyloglucan endotransglucosylase/hydrolase protein 28 (Precursor)
trEMBL	tr\|I1KKZ1\|I1KKZ1_SOYBN	0	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000856s00034993.1
AGCGTTCGGATCCTCTGCAGTGTCTTCCTCTCTATCACTTCCACCTGTAGTTATATTCCATACCTCTCTTCTTCTCCTTCATCACTTTTCCCTCTATCTAATTTCTTTTCTTCTCTTATATAAAAATAATAAACATTGCACTCACCACTCACATACTGATAATAATTTTTATTGAGGAAAACAAACATGGGAAATATGGGGTTGCTCTTGTTCTGTTCTCTGCTTTTTGTTCTGGCTTCTGGGTCACCCAGAAACTTGCCCATCGTAGCCTTTGAGGAAGGGTACTCGCCCTTGTTTGGGGACCATAACTTGGTCATCCATAGGGATGGAAAAACGGTTCATCTTTCACTTGATGAGAGAACAGGCTCTGGATTTGCGTCTCATGATCTTTACCTTCACGGGTATTTCAGTGCTTCGATTAAGTTGCCTGCTGATTACACTGCTGGGGTCGTGGTTGCTTTTTATATGTCAAATGGTGACATGTTCGAGAAGAACCATGATGAAATCGACTTTGAGTTTTTGGGAAACATTAGGGGCAAGGACTGGAGAATTCAGACTAATGTTTATGGTAATGGAAGTACCAGCATTGGTAGAGAAGAAAGATATCNTCTCTGGTTTGATCCTGCTGAGGATTTCCATCAGTACAGTATTTTTTGGACAGATTCCAAGATCATATTTTATGTAGATAATGTTCCCATTAGAGAAGTTAAACGAACAGAGACAATGGGAGGAGATTTCCCCTCAAAGCCAATGACTTTGTATGCAACCATATGGGATGCATCTGATTGGGCTACCAATGGAGGCAAATACAGAGTAAATTACAAATATGCACCCTATGTTGCTGAGTTCTCTGACCTTGTCCTTCATGGTTGTGCAGTTGATCCCATTGAGAAAGTGACCAAGTGTGATGATGACAGTGCTCTAAATTCTGATGCAGTAGTTCCTTCTGGTATAACACCAGTGCAGAGAATTGAAATGCAGAACTTCAGGTTGAAACACATGACATATTCTTACTGTTATGACNGAACCAGATACAAATCCCCTCCACCAGAGTGTGTGGTCAATGCTCAACAAGCTGAAAGGCTAAGGAAATTTGATCCNGTCACATTTGGTAACGGCCGGCGCCGCCATGGAAAACGATACCATCACAACAGAGGCAACCAGGCTGAGGCTGCTTCATTTTAATATTGATTCGATGTGAAGATTTTGTCATAAGATAAATGTTTTTCATCTTGATTCAGTTTGATTTACCTAGGTTAACANTATATCTTTTTCCCTTTTCCTTTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00856	37803	40923	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000856s00034993.1	PF00722.16	Glyco_hydro_16	30	213	1.70E-56
Glyur000856s00034993.1	PF06955.7	XET_C	253	290	3.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.025
SRR1783600	control	2.957
SRR1783602	moderate drought stress	2.210
SRR1811619	moderate drought stress	2.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.523
DRR006520	Root Summer glycyrrhizin high producing strain	2.663
DRR006521	Root Winter glycyrrhizin high producing strain	2.685
DRR006522	Root Winter glycyrrhizin high producing strain	2.567
DRR006523	Root Summer glycyrrhizin low producing strain	12.841
DRR006524	Root Summer glycyrrhizin low producing strain	12.590
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.215
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.213

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.713
SRR2868004	Drought Stress (root)	1.761
SRR2967015	Control (root)	2.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.314
SRR9715740	Leaf	1.106
SRR9715741	Leaf	1.410
SRR9715739	Root	0.979
SRR9715742	Root	1.314
SRR9715743	Root	1.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.614
SRR8749028	MeJA induced 9h	32.163
SRR8749029	MeJA induced 9h	19.772
SRR8749030	Uninduced	15.450
SRR8749031	Uninduced	8.835
SRR8749032	Uninduced	6.178

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.101
SRR8400027	Control - Root	2.359