Gene detail information of Glyur000855s00033353 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68760.1 | 7.00E-16 | nudix hydrolase 1 |
| NR | XP_003516865.1 | 4.49E-34 | PREDICTED: nudix hydrolase 1-like [Glycine max] |
| COG | YP_154697.1 | 2.00E-13 | MutT/nudix family protein [Idiomarina loihiensis L2TR] |
| Swissprot | tr|Q9CA40|NUDT1_ARATH | 1.00E-19 | Nudix hydrolase 1 |
| trEMBL | tr|I1J6S8|I1J6S8_SOYBN | 2.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G22830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00855 | 101158 | 101379 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.354 |
| SRR1783600 | control | 10.294 |
| SRR1783602 | moderate drought stress | 6.730 |
| SRR1811619 | moderate drought stress | 9.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.652 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.993 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.089 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.315 |
| SRR2868004 | Drought Stress (root) | 105.724 |
| SRR2967015 | Control (root) | 42.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.299 |
| SRR9715740 | Leaf | 2.205 |
| SRR9715741 | Leaf | 4.587 |
| SRR9715739 | Root | 34.822 |
| SRR9715742 | Root | 223.384 |
| SRR9715743 | Root | 165.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 124.123 |
| SRR8749028 | MeJA induced 9h | 212.654 |
| SRR8749029 | MeJA induced 9h | 426.495 |
| SRR8749030 | Uninduced | 27.766 |
| SRR8749031 | Uninduced | 57.084 |
| SRR8749032 | Uninduced | 207.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.195 |
| SRR8400027 | Control - Root | 35.122 |