Gene detail

Gene detail information of Glyur000854s00021830.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G11380.1	1-deoxy-D-xylulose 5-phosphate synthase 3
NR	XP_004501298.1	PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum]
COG	YP_001412061.1	1-deoxy-D-xylulose-5-phosphate synthase [Parvibaculum lavamentivorans DS-1]
Swissprot	tr\|O78328\|DXS_CAPAN	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|G7JBM5\|G7JBM5_MEDTR	1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313\|EMBL:AES73691.1}

Sequence

Transcript Sequence

>Glyur000854s00021830.1
GGATTAATCGATCGAGTANGTGCACGACCGGATATTGATGACTTCTACTGGGAAAGAGTTCCAACACCCATTCTTGACACGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAATTGAAACAACTAGCTGCTGAAATCCGTATAGATTTGTCTTATATTATGTCGGGTACGCAAATATCACTCAAACCAAGTATGGGTGCGGTAGAGCTGACAGTTGCAATACATCACGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGAAGAGCACTCATGAAGACAATCAGACAAAAGAATGGNCTTTCTGGTTCTACTTCTCGATTTGAGAGTGAATATGATGCATTTGGAGCAGGTCATGGATGCAACAGTATATCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAAGGGAGGAGAGAACGCATAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTGGTGATTTTGAATGATAGCCGTCACTCTTTACTCCCAAAAATTGAGGAAGGCCCGAAGACATCTGTCAATGTCCTATCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAAGTTTAGAGAAGCTGCCAAGGGTGTTACGAAACGTATTGGTAGGGGAATGCATGAATTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGCCCACTGGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAAGATCTAATACNTGTTCTGCAAGAAGTAGCTTCCTTGGATTCAATGGGTCCTGTCCTGGTTCATGTTATAACTGATGAAAATCAGGAAGACGAAAATAATCAGAAAAATGATATAACAGACAGGGAACAGGATGATTCTGTTAGATCTGATTCATTAGATTATGCTGGTCGGCTTCAAACATATGGTGATTGCTTTGTGGAGACATTGGTTGCAGAAGCAGCGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAATCACGATGGAGCCATCACTTGAACTGTTTCGGNAAAAATTTCCAGATAGGTTTTTTAATTTGGGAATGGCTGAGCAACATGCAGTCTCATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCNTTTCTACAGAGAGCCTATGATCAGGTGGTCCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACACTTATGTCATGCTTACCAAACATGATTGTCATGGCACCATCCGATGAGGTTGAACTTGTGCACATGGTGGCTACCGCTACTCGTATCAATGATCGGCCAGTTTGCTTTCGGTATCCTCGGGGTGCCTTGGTTGGGAAAGACCACACTATATGTGATGGAATCCCCATTGAGATTGGAAAAGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCTTTTCTGGGATATGGATCAATGGTTCAGAACTGTCTAAGGGCTCATTCACTTCTTGCGAAGCTNGGTGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTTAGGCAGCTTTGTAAAAACCATTCTTTCCTAATTACTGTGGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAATTTATTGCACTTGATGGACTACTTGATCGAAGAATTAAGTGGCGACCAATTGTCTTACCTGACAGTTATATTGAACATGCATCACCAAATGAGCAGCTTGACCAAGCGGGGTTGACCGGACATCACATTGCTGCCACGGCGTTGAGTTTGCTGGGCCGTACCCGTGAAGCGCTCTCGTTTATGTGTTCCTGACGCAGATGNTTCATGTCCTTTCCCAGATATGATCAATGGAAGTTGGATAGCTGCATAGGANAATCAAGAATGCAAAGGGCTTCATGAGGCTTTACTGATGTGTTTCTATGTGTAATCTTGCCTAGTTCTGCTTTACATGTCTGGGGGGAAATAGAGATGATCAATGCCATGTTAATTGTATAGAACTGAATGTCAAATAGAAGAAAAAAAAATGCTAATATAAACTGTGACAGTCTAACCAATCAAGATATATGATATCATAGATAGAGAATGCATTACTCAACTCAGTCTAGCGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00854	98654	103775	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01662	dxs	EC:2.2.1.7	Thiamine metabolism	map00730
			Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0016114 terpenoid biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000854s00021830.1	PF13292.1	DXP_synthase_N	25	309	2.00E-82
Glyur000854s00021830.1	PF02779.19	Transket_pyr	346	506	5.80E-29
Glyur000854s00021830.1	PF02780.15	Transketolase_C	522	645	1.60E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.367
SRR1783600	control	4.320
SRR1783602	moderate drought stress	5.933
SRR1811619	moderate drought stress	5.696

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.217
DRR006520	Root Summer glycyrrhizin high producing strain	8.234
DRR006521	Root Winter glycyrrhizin high producing strain	20.283
DRR006522	Root Winter glycyrrhizin high producing strain	19.825
DRR006523	Root Summer glycyrrhizin low producing strain	10.336
DRR006524	Root Summer glycyrrhizin low producing strain	9.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.470
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.382

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.267
SRR2868004	Drought Stress (root)	15.729
SRR2967015	Control (root)	16.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.672
SRR9715740	Leaf	8.439
SRR9715741	Leaf	7.260
SRR9715739	Root	2.898
SRR9715742	Root	8.193
SRR9715743	Root	7.699

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.607
SRR8749028	MeJA induced 9h	12.460
SRR8749029	MeJA induced 9h	7.283
SRR8749030	Uninduced	9.041
SRR8749031	Uninduced	7.592
SRR8749032	Uninduced	6.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.952
SRR8400027	Control - Root	13.132