Gene detail information of Glyur000854s00021825 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32440.2 | 9.00E-35 | Plant Tudor-like RNA-binding protein |
| NR | XP_006578162.1 | 3.49E-112 | PREDICTED: uncharacterized protein LOC100812171 isoform X8 [Glycine max] |
| trEMBL | tr|I1JUF9|I1JUF9_SOYBN | 7.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G07330.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00854 | 57161 | 61331 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000854s00021825.1 | PF05641.7 | Agenet | 3 | 65 | 4.20E-11 |
| Glyur000854s00021825.2 | PF05641.7 | Agenet | 3 | 65 | 6.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.025 |
| SRR1783600 | control | 6.030 |
| SRR1783602 | moderate drought stress | 13.476 |
| SRR1811619 | moderate drought stress | 13.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.923 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.854 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.239 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.973 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.649 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.026 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.234 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.651 |
| SRR2868004 | Drought Stress (root) | 33.202 |
| SRR2967015 | Control (root) | 27.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.180 |
| SRR9715740 | Leaf | 9.220 |
| SRR9715741 | Leaf | 11.999 |
| SRR9715739 | Root | 4.087 |
| SRR9715742 | Root | 10.315 |
| SRR9715743 | Root | 8.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.911 |
| SRR8749028 | MeJA induced 9h | 14.804 |
| SRR8749029 | MeJA induced 9h | 5.151 |
| SRR8749030 | Uninduced | 4.986 |
| SRR8749031 | Uninduced | 7.919 |
| SRR8749032 | Uninduced | 4.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.654 |
| SRR8400027 | Control - Root | 31.372 |