Gene detail information of Glyur000854s00021822.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22760.1 | 9.00E-20 | Tesmin/TSO1-like CXC domain-containing protein |
| NR | NP_001236112.1 | 2.30E-31 | cysteine-rich polycomb-like protein [Glycine max] |
| Swissprot | tr|Q8L548|TCX3_ARATH | 7.00E-21 | Protein tesmin/TSO1-like CXC 3 |
| trEMBL | tr|Q9ZS22|Q9ZS22_SOYBN | 9.00E-32 | Cysteine-rich polycomb-like protein {ECO:0000313|EMBL:CAA09028.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00854 | 42865 | 44887 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CPP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000854s00021822.1 | PF03638.10 | TCR | 271 | 310 | 3.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.104 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.581 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.026 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.103 |
| SRR2868004 | Drought Stress (root) | 0.131 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.034 |
| SRR8749030 | Uninduced | 0.058 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.012 |
| SRR8400027 | Control - Root | 0.000 |