Gene detail information of Glyur000854s00021818 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15680.1 | 9.00E-41 | Ran BP2/NZF zinc finger-like superfamily protein |
| NR | XP_003603428.1 | 1.18E-77 | Zinc finger protein-like protein [Medicago truncatula] |
| trEMBL | tr|G7JB51|G7JB51_MEDTR | 1.00E-77 | Zinc finger (Ran-binding) family protein {ECO:0000313|EMBL:AES73679.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00854 | 24272 | 25917 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000854s00021818.1 | PF00641.13 | zf-RanBP | 3 | 31 | 0.00022 |
| Glyur000854s00021818.1 | PF00641.13 | zf-RanBP | 58 | 89 | 1.10E-07 |
| Glyur000854s00021818.1 | PF00641.13 | zf-RanBP | 120 | 149 | 2.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.755 |
| SRR1783600 | control | 6.382 |
| SRR1783602 | moderate drought stress | 9.642 |
| SRR1811619 | moderate drought stress | 9.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.144 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.059 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.119 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.461 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.206 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.659 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.014 |
| SRR2868004 | Drought Stress (root) | 6.922 |
| SRR2967015 | Control (root) | 8.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.894 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 1.707 |
| SRR9715739 | Root | 10.606 |
| SRR9715742 | Root | 18.058 |
| SRR9715743 | Root | 14.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.283 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.337 |
| SRR8400027 | Control - Root | 25.733 |