Gene detail information of Glyur000854s00021813 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31980.1 | 8.00E-68 | |
| NR | XP_004501312.1 | 0 | PREDICTED: UPF0481 protein At3g47200-like [Cicer arietinum] |
| Swissprot | tr|Q9SD53|Y3720_ARATH | 1.00E-44 | UPF0481 protein At3g47200 |
| trEMBL | tr|G7JB49|G7JB49_MEDTR | 0 | DUF247 domain protein {ECO:0000313|EMBL:AES73677.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00854 | 3997 | 5268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000854s00021813.1 | PF03140.10 | DUF247 | 28 | 411 | 2.50E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.224 |
| SRR1783600 | control | 1.094 |
| SRR1783602 | moderate drought stress | 1.833 |
| SRR1811619 | moderate drought stress | 1.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.469 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.407 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.395 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.271 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.495 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.594 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.858 |
| SRR2868004 | Drought Stress (root) | 3.676 |
| SRR2967015 | Control (root) | 5.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.803 |
| SRR9715740 | Leaf | 1.222 |
| SRR9715741 | Leaf | 1.204 |
| SRR9715739 | Root | 0.335 |
| SRR9715742 | Root | 1.119 |
| SRR9715743 | Root | 0.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.536 |
| SRR8749028 | MeJA induced 9h | 1.551 |
| SRR8749029 | MeJA induced 9h | 1.244 |
| SRR8749030 | Uninduced | 1.230 |
| SRR8749031 | Uninduced | 1.574 |
| SRR8749032 | Uninduced | 1.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.331 |
| SRR8400027 | Control - Root | 2.741 |