Gene detail information of Glyur000853s00029670 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03260.1 | 1.00E-79 | SNARE associated Golgi protein family |
| NR | XP_004508372.1 | 7.77E-155 | PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like isoform X1 [Cicer arietinum] |
| COG | YP_006448206.1 | 1.00E-48 | hypothetical protein Desti_3284 [Desulfomonile tiedjei DSM 6799] |
| trEMBL | tr|A0A072V251|A0A072V251_MEDTR | 4.00E-151 | TVP38/TMEM64 family membrane slr0305-like protein {ECO:0000313|EMBL:KEH32200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00853 | 74571 | 78614 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000853s00029670.1 | PF09335.6 | SNARE_assoc | 65 | 182 | 5.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.990 |
| SRR1783600 | control | 8.096 |
| SRR1783602 | moderate drought stress | 7.722 |
| SRR1811619 | moderate drought stress | 7.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.104 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.454 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.059 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.543 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.725 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.543 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.436 |
| SRR2868004 | Drought Stress (root) | 4.984 |
| SRR2967015 | Control (root) | 5.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.893 |
| SRR9715740 | Leaf | 3.733 |
| SRR9715741 | Leaf | 5.346 |
| SRR9715739 | Root | 1.821 |
| SRR9715742 | Root | 5.011 |
| SRR9715743 | Root | 4.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.942 |
| SRR8749028 | MeJA induced 9h | 2.427 |
| SRR8749029 | MeJA induced 9h | 2.434 |
| SRR8749030 | Uninduced | 1.830 |
| SRR8749031 | Uninduced | 0.653 |
| SRR8749032 | Uninduced | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.828 |
| SRR8400027 | Control - Root | 7.127 |