Gene detail

Gene detail information of Glyur000853s00029666.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19040.1	3.00E-89	isopentenyltransferase 5
NR	KHN37566.1	9.28E-160	Adenylate isopentenyltransferase 5, chloroplastic [Glycine soja]
COG	YP_003621095.1	3.00E-25	tRNA delta 2-isopentenylpyrophosphate transferase [Leuconostoc kimchii IMSNU 11154]
Swissprot	tr\|Q94ID2\|IPT5_ARATH	9.00E-117	Adenylate isopentenyltransferase 5, chloroplastic (Precursor)
trEMBL	tr\|Q2MHM8\|Q2MHM8_PEA	9.00E-159	Adenylate isopentenyltransferase {ECO:0000313\|EMBL:BAE75938.1}

Sequence

Transcript Sequence

>Glyur000853s00029666.1
ATGAATATCTTTTGGGCATCNTCGGCGGCAGCAGCAGCATCAGCCTGCAAGCCCATAGTGAGTAATTTCCAACCGGCACTGATGAGCATGGATTCCTTAATGTCTCACCATCATCGGAAGGACAAGGTAGTTGTGATAATGGGGGCCACCGGAACCGGCAAGTCAAAACTGGCCATAGACTTAGCCACCCATTTCCCACCGGCCGAGGTTGTCAACTCCGACAAAATGCAAGTCTACAAGGGCCTCGACATCACCACCAACAAGGTCACAGAGGAAGAGCGTCGTGGGGTCCCACACCACCTATTGGGTACGGTACTTGATCAAGGCTCCAATTTCACCGTGAACGACTTTTGTGAACAAGCCACTCTGGCCATTGGGTCCATCGTGGGGAGGGATGGGTTACCCATCATTGCCGGTGGGTCCAATTCATTCCTCGATGCNTTGGTCAACCATTGCCCTGAGTTCCGTTTGAGGTACGAGTGTTGCTTCCTCTGGGTCGATGTCTCTCTCCCCGTGCTTCATTCCTCTTTGTCGGCACGTGTGGATCGCATGATTGAGGCTGGACAGGTCGATGAGGTTCGTCATTTTTTTGACCCGGATGATAAGGACTATGCGAAAGGGATACGAAGGGCCATTGGGGTCCCTGAATTCGACCAATTCCTCAGAGCAGAATTAGAAGCAGAGTCCGACGAAGAAACTAAAAGGAGGCTCCTTGAGGCTGCCATTGCGGCACTCAAAATCAACAACATCAACCTCGCCAACAGACAGGNCCAGAAGATTCATCGCCTTTACGGCTTGTGGAAGAGGAACATGCACCGGCTCGATGCTACCGAGGTTTTACTCAGGAGTAGTAGTTCCCCTGGTGAAGCAGAGGAGGCGTGGGAGGATCACGTGTTGGCCAAGAGTCGCAGGATCGTTCACAAGTTCCTTTCGGCGCCTGCACTGTTCCTTTTTCTGAATCTTCCGTACACCGATCGAGTGCGGTGCACCTGCATCGAACATGATAAAGTTGCCTCTTCGTGGGGTCCAATCCATTGTTCAGTGATTTGTGATGGGCCAGCCAATGGCCGCATCTTTTCTGTAACTATGCGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00853	42561	45392	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10760	IPT	EC:2.5.1.27 2.5.1.112	Zeatin biosynthesis	map00908

Gene Ontology

biological_process
GO:0008033 tRNA processing

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000853s00029666.1	PF01715.12	IPPT	76	154	2.30E-16
Glyur000853s00029666.1	PF01715.12	IPPT	156	261	2.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.221
SRR1783600	control	2.233
SRR1783602	moderate drought stress	2.011
SRR1811619	moderate drought stress	1.977

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.332
DRR006520	Root Summer glycyrrhizin high producing strain	26.118
DRR006521	Root Winter glycyrrhizin high producing strain	0.102
DRR006522	Root Winter glycyrrhizin high producing strain	0.098
DRR006523	Root Summer glycyrrhizin low producing strain	1.242
DRR006524	Root Summer glycyrrhizin low producing strain	1.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.565
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.681

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.959
SRR2868004	Drought Stress (root)	2.471
SRR2967015	Control (root)	2.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.535
SRR9715740	Leaf	1.004
SRR9715741	Leaf	1.112
SRR9715739	Root	2.959
SRR9715742	Root	8.373
SRR9715743	Root	5.133

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.095
SRR8400027	Control - Root	1.389