Gene detail

Gene detail information of Glyur000851s00032129

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68540.1	1.00E-132	NAD(P)-binding Rossmann-fold superfamily protein
NR	KHN24189.1	0	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
COG	YP_002015379.1	4.00E-54	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q9CA28\|TKPR2_ARATH	3.00E-166	Tetraketide alpha-pyrone reductase 2
trEMBL	tr\|C6TGW8\|C6TGW8_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU21070.1}

Sequence

Transcript Sequence

>Glyur000851s00032129.1
AACAAATGTTAATAAAATATGATTCGTGTGAATCATCTGTATTCTACCCAACAAATTATATTCATGGGGATACGCATTTCACGTGACACTCATGCTTTTAGCACTTTGTAGTTCGTCGATTCACTCCTCCTCTATCCTCCTCCTACATAAAACCACTTCACGTGATGAGATCCAGAAAGTAACCGTAACCCAAGTCTCGACCACAACAAAACAGAGAAAACAGAGAGGGACTCAAAANGAAGAAGAAGCGATAGAGAGAAGATGCCTGAATTGTGCGTGACAGGGGGCACTGGCTTCATAGCAGCTTACCTTGTGAAGGCCTTATTAGAAAAGGGTCACACAGTAAGAACCACTGTGAGAAACCCAGGGGATGTGGAGAAGGTTGGTTTTCTGAGTGAACTAAGTGGAGCAAAAGAGAGACTGAAGATTGTGAAAGCAGATCTGATGGTGGAAGGGAGCTTTGATGAGGCAGTGAGTGGGGTTGATGGTGTCTTTCATACAGCTTCCCCAGTCCTTGTTCCATACGATGACAACATTCAGGAAACTTTGATTGATCCCTGTATAAAAGGAACGCTGAATGTGCTCAACTCCTGCGTCAAAGCAAATGTGAAACGGGTGGTGCTCACATCATCTTGCTCTTCCATAAGATACCGTGACGATGTGCAACAAGTGTCTCCTCTTAACGAATCTCATTGGAGTGATCTAGAATACTGCAAACGCTATAACTTATGGTATGCATATGCAAAGACGGTGGGAGAAAGAGAGGCTTGGGAGATTGCAAAGGAAAGTGGCATGGATCTAGTGGTGGTTAACCCCTCCTTTGTTGTCGGTTTGAGGGGTGAATATCCAAACACAACAGTGGGCTTTGTACACATAAATGATGTAATAGATGCTCACTTGTTGGCTATGGAGGAGCCTAAAGCATCTGGCAGGCTTGTTTGTTCAAGCAAAGTGGCCCACTGGTCTCAAATCATTGATATGCTTCGGGCCAAGTATCCTTCCTATCCATATGAGAACAAGTGTAGCAGCCAGGAAGGAGATAATAATACACATAGAATGGACACTACCAAAATCACTCAATTGGGGTTTCCTCCATTCAAAACCCTTGAACAAATGTTTGATGACTGCATCAAAAGCTTTCAAGACAAGGGCTTCCTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00851	50008	54664	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000851s00032129.1	PF01370.16	Epimerase	5	192	2.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.825
SRR1783600	control	18.648
SRR1783602	moderate drought stress	7.087
SRR1811619	moderate drought stress	7.390

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.690
DRR006520	Root Summer glycyrrhizin high producing strain	2.774
DRR006521	Root Winter glycyrrhizin high producing strain	0.095
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	0.069
DRR006524	Root Summer glycyrrhizin low producing strain	0.094
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.923
SRR2868004	Drought Stress (root)	51.206
SRR2967015	Control (root)	74.993

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.202
SRR9715740	Leaf	0.519
SRR9715741	Leaf	0.624
SRR9715739	Root	5.740
SRR9715742	Root	3.501
SRR9715743	Root	4.068

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.571
SRR8749028	MeJA induced 9h	8.071
SRR8749029	MeJA induced 9h	10.143
SRR8749030	Uninduced	0.384
SRR8749031	Uninduced	0.221
SRR8749032	Uninduced	1.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.551
SRR8400027	Control - Root	16.096