Gene detail

Gene detail information of Glyur000849s00021635

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G50010.1	tubulin alpha-2 chain
NR	XP_004496862.1	PREDICTED: tubulin alpha chain-like [Cicer arietinum]
Swissprot	tr\|Q6VAF9\|TBA4_GOSHI	Tubulin alpha-4 chain
trEMBL	tr\|A0A072VQC8\|A0A072VQC8_MEDTR	Tubulin beta-1 chain {ECO:0000313\|EMBL:KEH43997.1}

Sequence

Transcript Sequence

>Glyur000849s00021635.1
ATGGTTAAGCATAAGGACAGCACAGCAACCCCAAATACCTCTCTATAAATAAAACCCAAATATCGCAAACGCCGCTCACATTAACGTTCAGATCCAGAAGAAGGCGTCTTCATAAACGCCTTCCCTCTTTGTTACCAATCTCTTCGTTTCTACTTCATTCTAAATCTCTTCCTTTCATTTTTGATCAGCGAGAATGAGAGAGTGCATCTCAATCCACATTGGNCAGGCCGGCATTCAGGTCGGAAATGCTTGCTGGGAGCTCTACTGTCTCGAGCACGGCATCGGGCCTGATGGCCAAATGCCAAGTGACAAGACCGTTGGGGGTGGTGACGATGCCTTCAACACTTTCTTTAGCGAGACTGGTGCTGGAAAGCATGTCCCACGTGCCGTTTTTGTAGATCTGGAGCCCACCGTTATTGATGAGGTGAGGACTGGAACATACCGCCAGCTTTTCCACCCGGAGCAGCTTATCAGCGGCAAAGAAGATGCTGCCAACAACTTTGCCCGTGGTCATTATACCATTGGGAAAGAGATCGTTGATCTGTGCTTGGACCGCATCAGAAAGCTTGCTGACAACTGCACTGGTCTCCAAGGGTTCTTGGTCTTCAATGCCGTTGGTGGAGGAACCGGTTCTGGGCTTGGTTCCCTTCTCCTGGAGCGTCTGTCTGTTGACTACGGCAAGAAGTCAAAGCTTGGGTTCACTGTCTATCCCTCTCCTCAGGTGTCCACCTCTGTTGTTGAGCCATACAACAGTGTCCTCTCCACCCACTCCCTCTTGGAGCACACCGATGTTGCTGTTCTTTTGGACAATGAAGCTATATATGACATNTGTAGGCGCTCCCTTGACATTGAGCGTCCCACCTACACCAACCTCAACCGTCTTGTTTCNCAGGTGATTTCTTCCCTGACTGCTTCCCTGAGGTTCGATGGTGCCCTCAATGTGGATGTGACTGAATTCCAGACCAACTTGGTCCCCTATCCTAGAATCCATTTTATGCTTTCTTCATATGCTCCAGTCATCTCGGCTGAGAAGGCTTACCATGAGCAGCTTTCAGTGGCTGAGATTACCAACAGTGCGTTTGAGCCATCATCTATGATGGCCAAGTGCGACCCTCGCCATGGAAAGTACATGGCATGCTGTCTGATGTACCGTGGTGATGTTGTACCTAAAGATGTGAATGCTGCTGTTGCCACCATCAAAACCAAGAGGACCATCCAGTTTGTGGATTGGTGCCCTACTGGTTTCAAGTGTGGTATTAACTACCAACCACCGACTGTTGTTCCTGGTGGTGACCTTGCTAAGGTACAGAGGGCAGTTTGCATGATTTCAAACTCTACTAGTGTAGCTGAGGTGTTTGGTCGCATTGATCACAAGTTCGATCTCATGTATGCCAAGCGTGCTTTCGTCCACTGGTACGTTGGTGAGGGTATGGAAGAAGGTGAATTTTCTGAAGCTCGTGAGGATCTTGCTGCTCTGGAAAAGGATTACGAAGAAGTGGGTGCTGAATCTGGTGAGGGTGGGGAGGACGATATGGAGGACTACTAAGAATCTATTTCAGATTCTTGTGGCTGTATATGTTCTTGTATCGATGGGTTGTGTCTTTGTTGTNATGATGGCCTTCATTTCAGCCTCGGTTGTTTGTTCCTTTTAATGCTTGGTTGTTTCTTCAATATTGTTACAGACCTAAACGTGTTTTTTAATGACATGCTATCTATATCTTATCGATTATCTGAAGTTATATGCTGTCTTTGTTTTATTGTTGACACATTTATTTTTCTGCTCTTTCCCGAAGCGCGGCAACTCCGTGGGGTCAAAGGGCATGGAGATTTTTCAAACTTTCACTTTTGTAAATTGGTAGTTTCAATTTTATCATTCAAAAATGTTTCATGGACACCTAATCACTCAATCAACACTCACTTAATGTATTGTATATGTCACATCATGGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00849	49946	52849	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000849s00021635.1	PF00091.20	Tubulin	3	225	6.10E-68
Glyur000849s00021635.1	PF03953.12	Tubulin_C	263	392	1.00E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	294.602
SRR1783600	control	295.702
SRR1783602	moderate drought stress	106.796
SRR1811619	moderate drought stress	106.373

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	160.801
DRR006520	Root Summer glycyrrhizin high producing strain	159.130
DRR006521	Root Winter glycyrrhizin high producing strain	13.667
DRR006522	Root Winter glycyrrhizin high producing strain	13.096
DRR006523	Root Summer glycyrrhizin low producing strain	121.918
DRR006524	Root Summer glycyrrhizin low producing strain	121.604
DRR006525	Leaf Summer glycyrrhizin high producing strain	87.269
DRR006526	Leaf Summer glycyrrhizin high producing strain	86.545

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	478.820
SRR2868004	Drought Stress (root)	225.876
SRR2967015	Control (root)	279.548

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	110.409
SRR9715740	Leaf	35.286
SRR9715741	Leaf	56.450
SRR9715739	Root	200.946
SRR9715742	Root	134.902
SRR9715743	Root	143.817

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	321.009
SRR8749028	MeJA induced 9h	236.122
SRR8749029	MeJA induced 9h	122.341
SRR8749030	Uninduced	20.088
SRR8749031	Uninduced	13.080
SRR8749032	Uninduced	34.870

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	523.254
SRR8400027	Control - Root	480.528