Gene detail information of Glyur000847s00024867 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57290.1 | 3.00E-20 | 60S acidic ribosomal protein family |
| NR | XP_008451467.1 | 8.13E-29 | PREDICTED: 60S acidic ribosomal protein P3-2 isoform X1 [Cucumis melo] |
| Swissprot | tr|O24413|RLA3_MAIZE | 4.00E-27 | 60S acidic ribosomal protein P3 |
| trEMBL | tr|A0A0A0LJB2|A0A0A0LJB2_CUCSA | 1.00E-27 | Uncharacterized protein {ECO:0000313|EMBL:KGN61159.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00847 | 52750 | 54154 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000847s00024867.1 | PF00428.14 | Ribosomal_60s | 66 | 119 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.372 |
| SRR1783600 | control | 15.437 |
| SRR1783602 | moderate drought stress | 10.709 |
| SRR1811619 | moderate drought stress | 10.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.062 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.674 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.202 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.685 |
| SRR2868004 | Drought Stress (root) | 37.114 |
| SRR2967015 | Control (root) | 26.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.929 |
| SRR9715740 | Leaf | 31.535 |
| SRR9715741 | Leaf | 28.015 |
| SRR9715739 | Root | 42.410 |
| SRR9715742 | Root | 31.302 |
| SRR9715743 | Root | 35.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.140 |
| SRR8749028 | MeJA induced 9h | 18.861 |
| SRR8749029 | MeJA induced 9h | 27.868 |
| SRR8749030 | Uninduced | 6.560 |
| SRR8749031 | Uninduced | 0.874 |
| SRR8749032 | Uninduced | 2.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.253 |
| SRR8400027 | Control - Root | 53.988 |