Gene detail information of Glyur000847s00024865 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26380.1 | 0 | Melibiase family protein |
| NR | XP_003538597.1 | 0 | PREDICTED: uncharacterized protein LOC100777954 [Glycine max] |
| COG | YP_004089290.1 | 5.00E-58 | glycoside hydrolase clan gh-d [Asticcacaulis excentricus CB 48] |
| Swissprot | tr|Q42656|AGAL_COFAR | 1.00E-16 | Alpha-galactosidase (Precursor) |
| trEMBL | tr|I1LNG1|I1LNG1_SOYBN | 0 | Alpha-galactosidase {ECO:0000256|RuleBase:RU361168} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00847 | 46181 | 51566 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000847s00024865.1 | PF02065.13 | Melibiase | 21 | 143 | 3.00E-06 |
| Glyur000847s00024865.1 | PF00652.17 | Ricin_B_lectin | 462 | 526 | 0.00028 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.068 |
| SRR1783600 | control | 14.994 |
| SRR1783602 | moderate drought stress | 33.593 |
| SRR1811619 | moderate drought stress | 33.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.088 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.721 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.223 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.505 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.987 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.729 |
| SRR2868004 | Drought Stress (root) | 44.163 |
| SRR2967015 | Control (root) | 55.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.222 |
| SRR9715740 | Leaf | 47.479 |
| SRR9715741 | Leaf | 52.180 |
| SRR9715739 | Root | 3.646 |
| SRR9715742 | Root | 15.995 |
| SRR9715743 | Root | 14.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.307 |
| SRR8749028 | MeJA induced 9h | 62.792 |
| SRR8749029 | MeJA induced 9h | 20.058 |
| SRR8749030 | Uninduced | 68.185 |
| SRR8749031 | Uninduced | 66.313 |
| SRR8749032 | Uninduced | 71.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.021 |
| SRR8400027 | Control - Root | 20.494 |