Gene detail information of Glyur000847s00024863.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26370.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004502388.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 4.00E-68 | Uncharacterized protein At1g04910 |
| trEMBL | tr|G7J356|G7J356_MEDTR | 0 | Growth regulator-like protein {ECO:0000313|EMBL:AES72149.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00847 | 36979 | 44458 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000847s00024863.1 | PF10250.4 | O-FucT | 161 | 201 | 3.20E-13 |
| Glyur000847s00024863.1 | PF10250.4 | O-FucT | 205 | 451 | 2.10E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.439 |
| SRR1783600 | control | 22.596 |
| SRR1783602 | moderate drought stress | 24.442 |
| SRR1811619 | moderate drought stress | 24.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.625 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.224 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.021 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.916 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.222 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.961 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.207 |
| SRR2868004 | Drought Stress (root) | 34.503 |
| SRR2967015 | Control (root) | 38.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.711 |
| SRR9715740 | Leaf | 17.636 |
| SRR9715741 | Leaf | 21.357 |
| SRR9715739 | Root | 13.988 |
| SRR9715742 | Root | 24.637 |
| SRR9715743 | Root | 22.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.923 |
| SRR8749028 | MeJA induced 9h | 36.684 |
| SRR8749029 | MeJA induced 9h | 23.075 |
| SRR8749030 | Uninduced | 19.539 |
| SRR8749031 | Uninduced | 10.359 |
| SRR8749032 | Uninduced | 11.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.347 |
| SRR8400027 | Control - Root | 39.692 |