Gene detail

Gene detail information of Glyur000846s00019247

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19220.1	2.00E-96	auxin response factor 19
NR	XP_004503551.1	7.28E-147	PREDICTED: auxin response factor 19-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q0D9R7\|ARFS_ORYSJ	2.00E-130	Auxin response factor 19
trEMBL	tr\|A0A061GRP5\|A0A061GRP5_THECC	7.00E-146	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000846s00019247.1
AAAAAAGAAAANAACAAATGAAGCAGTGGTCAACCATATTACAAGTTACAAGAAGCAGAAGCAGAAGGAACTAGGAAGGAAGTGTCTGATATATTTGCCTAGTAAGTAGTAGTAATACGNGAGAGATAGAGAAAGATAGAAAGAGAGGGAGAAAGGGGTGACTGAAAAAGAGAGTGGTACTTTTGAAGAGGAAAGGAACCGAATGTCGCAACCAATCACCATTTTGTTTTCCCTCTCTCTCTCTAACTTGGANGGAAAGTGACAACCCTTCCCTCTATCCTCGCCGCCGACAACCGGAGTTCACTCCTTTTCCGGCAATATTCGCCGTCGCCCCTGAGCTCACTCGACTCCATTCCTTAACTTGACCTCACAATCTATTTACGATTCTCTAAACTCTTCATCGCCAAAGATTCTTCTAATCCAACCTCACTTATTGTTCTTCCTTTTCGTCTACCATTTTTGAATAATTTATTTGTTTTTTTTGGTTTTCACTCACTCATCCCTATCTACTCTCGGTAAAGCTGCTGCACATTCCTCTCTTCAGATATAGTGCTTAACCCGTTTCATCTGCAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTAAATTCGATTAATAATCAGCACAGAGATGAATCGCTGAAACCACGCCAACAGATTGACCAAAGCAATGACGACACAGGAAGAAGGTGCCGCCGCCGCAGCACCACCCAACCCCTGCGAAGTTGATGGAATGACACGTGGTGGTGCAGAGGGAGTAGGAGTAGGAGTAGGAGGAGAAGAGAAGAAGAACGGCATAAACGAGGAGCTATGGCAAGCTTGTGCAGGGCCACTTGTCAACCTGCCTTTGGCTGGGACTCACGTCGTTTACTTCCCTCAAGGCCACAGCGAACAGAAAGATGTGGATGCCCAAATCCCAAACTATCCCAATCTTCCCTCCAAGTTGCCGTGTCTCCTTCACAATGTCACTTTGCATGCAGACCCAGAAACAGATGAAGTATATGCCCAGATGACACTTCAGCCAGTGTTTTCTTTTGACATGGATGCCTTATTAAGATCAGATATTTCTCTCAAGTCGAGCAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACAAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCAGCAGAGAAGATTTTCCCTCCTCTCGATTACTCTGCGCAACCTCCTGCTCAAGAAATTGTGGCCAGGGATTTGCATGATAATGTTTGGAAGTTCCGCCACATATTTCGTGATGAAAAGCAGCAGCTTCTACTGGGTATCAGACGAGCTAACAGGCAACCCACAAATTTATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTGCTGCAAACAATAGTCCCTTCACTGTGTTTTATAATCCCAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAGGGCAATATCCAGCCACCAAATATCACCTGGCATGCGCTTTCGAATGATGTTTGAAACAGAAGACTCGGGAACAAGAAGGTGCCTCACTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00846	31147	34194	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000846s00019247.1	PF02362.16	B3	144	209	3.30E-08
Glyur000846s00019247.1	PF06507.8	Auxin_resp	239	298	3.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.834
SRR1783600	control	7.602
SRR1783602	moderate drought stress	9.505
SRR1811619	moderate drought stress	9.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.630
DRR006520	Root Summer glycyrrhizin high producing strain	3.530
DRR006521	Root Winter glycyrrhizin high producing strain	0.590
DRR006522	Root Winter glycyrrhizin high producing strain	0.614
DRR006523	Root Summer glycyrrhizin low producing strain	4.493
DRR006524	Root Summer glycyrrhizin low producing strain	4.453
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.503
SRR2868004	Drought Stress (root)	22.496
SRR2967015	Control (root)	23.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.454
SRR9715740	Leaf	1.960
SRR9715741	Leaf	3.303
SRR9715739	Root	1.417
SRR9715742	Root	11.459
SRR9715743	Root	9.764

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.124
SRR8749028	MeJA induced 9h	14.120
SRR8749029	MeJA induced 9h	3.367
SRR8749030	Uninduced	1.958
SRR8749031	Uninduced	0.931
SRR8749032	Uninduced	1.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.099
SRR8400027	Control - Root	22.879