Gene detail

Gene detail information of Glyur000846s00019241

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10670.1	6.00E-96	non-intrinsic ABC protein 7
NR	XP_007160223.1	9.67E-175	hypothetical protein PHAVU_002G303300g [Phaseolus vulgaris]
COG	YP_007162981.1	2.00E-99	FeS assembly ATPase SufC [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q9CAF5\|AB6I_ARATH	2.00E-127	ABC transporter I family member 6, chloroplastic (Precursor)
trEMBL	tr\|V7CQ43\|V7CQ43_PHAVU	4.00E-175	Uncharacterized protein {ECO:0000313\|EMBL:ESW32219.1}

Sequence

Transcript Sequence

>Glyur000846s00019241.1
AGATATAAAAAAAAGAGGAAGTAATCAGGGAAGGGAAGTAGCTAGAGAAGAAAAAAAGAGGCGCAGAAGCACTAACTAGTTTTATCTTCTTTGCTTTGCGCTGTTGCGAAACGAAGTGATGATGGCGGTGGTATCATTGCCACTTCAATTCCGTTATTCTCCCACCACTCTCCGATCACCGCCGAAGTCAACTCTATCCACGCTCCGGCGCGTGAGNCACCGCACGTGCGTGGCGAGCAGCGAGAGACCCCTGCTCCAAGTGAACGACCTGAGGGCTAAGATCGTGGAATCAAACGTGGAGATTCTGCACGGCGTTAACCTCACCGTCAACCGAGGAGAGGTTCATGCCATCATGGGAAAAAACGGTTCTGGAAAGAGCACTTTCGCCAAGGTGTTGGTGGGGCACCCGGATTATGAGGTAACAGGAGGGAGCGTGGTGTTCAAAGGGGAGAATCTGCTGGAAATGGAACCGGAGGAAAGGTCGCTTGCGGGTCTGTTCATGAGTTTCCAATCCCCTGTTGAGATCCCTGGTGTTTCCAATGATGAGTTTCTGGTCATGGCCTACAATGCTCGGAGAAAAAAACTTGGCCTCCCTGAGCTTGGACCCCTCGAGAAGCTCCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTCAATGAAGGATTTAGTGGCGGTGAACGCAAACGCAATGAAATCCTGCAGCTTGCGGTTTTGGGGGCAGACATGGCTATTCTGGATGAAATTGATTCGGGATTGGATGTTGATGCGCTCAGGGATGTAGCCAGTGCAGTCAATAAGATTCTGACCCCAGAAAATTCTCTGTTGATGATAACTCATTATCGGCGAATTCTGGATCTTTTGAACCCTACCCATGTCCATGTTATGGACAAAGGCAAAATTACAAGGACAGGNGACATATCTATGGTAGAAGCAATTGAGGCTAAGGGATATGAAACAGCCTCTGCTTTAAATTAATACAGCTAGCACCGGTATTCTTTCTGACTTTGGTGTGAAGTTGCTGGGTTTGTTTCAGTTTAAATTCAATTCCATGCTGTAAATACTTGCACGAGTTAATTGCGGATGAGTGTCTCCCTTTCAAGATCATAATTGAGAATAGACAGTATATAATTAGGTGGGGCGATGATCAAAACTTTCTTAGAAGGTACCCATGATAAGATGTATTCATGTTGGGGNTCATAGCTATTTTTGTTTTCATTTTAATTTGAAATCTTTCTTCATTCTGGATTGATACTGCTGTTCTTGCTCCAAAACCCAGACGACAGTACTGCGCTGGGCTGTTGTTCAGTAGTTGCATCTTATGGAACTTTCTTCTGTAAGGATGAATTTGGGAAATTGGTTGTTTCATTGCTGGAAGATGTAGTTGAATATTATAATTGGGAAATTGGATACAGTTGCAGTTTAATTATTTAACCTACATGTTGGCTTGTTTCTGTGCACTCAACATTTTGTAATTTTTTCTATACCAAGAATAGCAGTTACTGACTCTGGGCATATAAATGTGGTGGTAATTAGNAATTACCATTAGTGAAGTCGTGCTTGGTGTCCATGGAATGTTTCAGTATAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00846	1371	4758	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000846s00019241.1	PF00005.22	ABC_tran	63	210	7.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.976
SRR1783600	control	22.201
SRR1783602	moderate drought stress	17.225
SRR1811619	moderate drought stress	17.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.750
DRR006520	Root Summer glycyrrhizin high producing strain	17.439
DRR006521	Root Winter glycyrrhizin high producing strain	11.953
DRR006522	Root Winter glycyrrhizin high producing strain	11.912
DRR006523	Root Summer glycyrrhizin low producing strain	16.975
DRR006524	Root Summer glycyrrhizin low producing strain	16.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.444

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.222
SRR2868004	Drought Stress (root)	38.427
SRR2967015	Control (root)	33.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.961
SRR9715740	Leaf	66.164
SRR9715741	Leaf	52.337
SRR9715739	Root	32.671
SRR9715742	Root	25.862
SRR9715743	Root	25.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.129
SRR8749028	MeJA induced 9h	13.817
SRR8749029	MeJA induced 9h	10.249
SRR8749030	Uninduced	6.344
SRR8749031	Uninduced	4.421
SRR8749032	Uninduced	5.631

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.790
SRR8400027	Control - Root	41.501