Gene detail

Gene detail information of Glyur000845s00034035

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01280.1	1.00E-93	voltage dependent anion channel 1
NR	AAQ87021.1	2.98E-175	VDAC1.3 [Lotus japonicus]
Swissprot	tr\|P42056\|VDAC2_SOLTU	1.00E-146	Mitochondrial outer membrane protein porin of 36 kDa
trEMBL	tr\|Q6W2J3\|Q6W2J3_LOTJA	1.00E-175	VDAC1.3 {ECO:0000313\|EMBL:AAQ87021.1}

Sequence

Transcript Sequence

>Glyur000845s00034035.1
TCTTCCCATCTAACGGCTACAGTTCATCCTCTCCCTCCACAATACTAGGGATTGCATTTTTTATTTTTTTCATTCTTCTGACTCACACCGCTTTCACTCATTTTCCCTTTCCTCCTTGTTTTCTCCCACTTTCCGCTTCTGTTTTCTCGGGAAAATCATGGTGAAGGGTCCAGGTCTCTACACCGATATCGGCAAGAAAGCTCGAGATCTTCTGTTCAAGGATTATCAAAATGATCACAAGGTCACCATCACCACTCAAACTGCTACTGGAGTGGAAATCACTTCAACTGGAGTCAGGAAAGGTGAGGTATATTTGGCTGATGTCANCACTAAGCTGAAGAACAAGAACATCACAACGGATCTACTTACAACCATTACTGTGGATGAACTTGCTCCTGGACTCAAGACAATTTTAAGTTTTATTTTTCCAGATCAGAAATCTGGCAAGGTGGAACTCCAGTACCAGCACGAGTATGCTGGAATCAGCACTAGCATTGGATTGACAGCTAGTCCCATTGTTAACTTCTCTGGTGTGATAGGAAATAATTTGGTCTCTGTTGGAACAGATCTTTCATTTGATACTGCTTCTGGCAACTTTGTCAAGTACAACGCAGCGCTGAACGTTACTCATGCTGACCTTATTGCTTCTCTNATTGTAAATGATAAAGGTGACACCCTTAATGCCTCCTATTACCACATTGTAAGCCCACTGACTAACACTGCTGTTGGNGCGGAGCTTTCGCATAGCTTTTCCAGCAACGAAAACATACTCACCATCGGTACACAGCATGCTCTTGACCCGATAACCTTGTTGAAAGCTCGGGTGAACAACTATGGCAGGGCAAGTGCTCTGATCCAGCATGACTGGAACCCAAGAACCAAAGTCTCTCTTGTCGGGGAGGTGGATACCNGTGCCATTGAAAAGAGTGCAAAGGTTGGTCTTGCTGTGGCCTTGAAGCCTTAGACTTGGTGAGTTTGTGAGTGATAGGCTGAGCCTCTCCAGTGGTGGAGGCAATAAGTTTAGTGGTAGGGGCTTTACTTTCCCAATGAAAACCTTTGGTCCATCATTTTGGAGCTATTAATTTCTTCATGTCTTGGTTTTAGGGTGTAAAAATAAGAACAGAACAATTTCCAAATTTGTATTCAACAAATCCACCCCGAACCTCATTGATATAGATGCANCTTTGAGTAAGTTTTTGAGCATGGAAGGTGATAGTCATGCTATATGATTGTTGTTGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00845	106561	109131	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006820 anion transport

GO:0044070 regulation of anion transport

GO:0055085 transmembrane transport

cellular_component
GO:0005741 mitochondrial outer membrane

molecular_function
GO:0008308 voltage-gated anion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000845s00034035.1	PF01459.17	Porin_3	5	261	5.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.223
SRR1783600	control	48.818
SRR1783602	moderate drought stress	44.558
SRR1811619	moderate drought stress	44.885

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.659
DRR006520	Root Summer glycyrrhizin high producing strain	58.345
DRR006521	Root Winter glycyrrhizin high producing strain	23.039
DRR006522	Root Winter glycyrrhizin high producing strain	22.517
DRR006523	Root Summer glycyrrhizin low producing strain	27.808
DRR006524	Root Summer glycyrrhizin low producing strain	28.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	69.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	68.849

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	175.405
SRR2868004	Drought Stress (root)	123.431
SRR2967015	Control (root)	123.416

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.916
SRR9715740	Leaf	102.428
SRR9715741	Leaf	75.720
SRR9715739	Root	49.174
SRR9715742	Root	37.355
SRR9715743	Root	33.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.359
SRR8749028	MeJA induced 9h	22.371
SRR8749029	MeJA induced 9h	30.511
SRR8749030	Uninduced	12.216
SRR8749031	Uninduced	3.800
SRR8749032	Uninduced	8.587

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	136.734
SRR8400027	Control - Root	130.387