Gene detail information of Glyur000845s00034031 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62740.1 | 4.00E-129 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| NR | XP_007153847.1 | 0 | hypothetical protein PHAVU_003G069700g [Phaseolus vulgaris] |
| COG | YP_007201322.1 | 2.00E-91 | membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q9FM19|HIR1_ARATH | 2.00E-162 | Hypersensitive-induced response protein 1 |
| trEMBL | tr|V7CA97|V7CA97_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00845 | 56692 | 58821 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000845s00034031.1 | PF01145.20 | Band_7 | 12 | 172 | 2.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.533 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.968 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.769 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.595 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.260 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.624 |
| SRR2868004 | Drought Stress (root) | 3.368 |
| SRR2967015 | Control (root) | 2.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.074 |
| SRR9715740 | Leaf | 1.057 |
| SRR9715741 | Leaf | 0.073 |
| SRR9715739 | Root | 0.876 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.982 |
| SRR8749028 | MeJA induced 9h | 3.425 |
| SRR8749029 | MeJA induced 9h | 3.937 |
| SRR8749030 | Uninduced | 4.708 |
| SRR8749031 | Uninduced | 3.512 |
| SRR8749032 | Uninduced | 2.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.071 |
| SRR8400027 | Control - Root | 0.093 |