Gene detail

Gene detail information of Glyur000844s00023283

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27480.1	9.00E-59	Calcium-binding EF-hand family protein
NR	XP_004487492.1	2.11E-130	PREDICTED: probable calcium-binding protein CML48-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9ZQH1\|CML48_ARATH	4.00E-75	Probable calcium-binding protein CML48
trEMBL	tr\|G7ITU0\|G7ITU0_MEDTR	3.00E-125	Calcium-binding EF-hand protein {ECO:0000313\|EMBL:AES67079.1}

Sequence

Transcript Sequence

>Glyur000844s00023283.1
TTTATGATGGCGTGTGGGGTATTATGTCATTTACATATTCGTGCTTCTGTTGTACTTTGAATCTCTGGTTTTGGGGTNTTCTCTTTCAAAACAAAACTTGAATTGAATTGAAGGGTAGCTTCGCTAGCTAGTTATGTCTACCTACAACAATAGATACAATTCTCAGTCTCAATCGTACGCTCCATCTGCGCCTGAGTTGCCCCAATATTCTAATGCTCCTCCTCATCCTCCTCCTTCTAACTACCACCAACAACACTCCACCCCTTATAATAATCCCCAAACTTCTTCTCCTGCTCCTGCGCCTTCTAACTACCAATATGGCCATAGTTATGGACAAGTTTCTTCTTCACATGGTTATTCTTCCTCTCCCTCTTCTTCGGTTTCGTCTTCTGGGTATTCGGGTTTCCCACCTGGGACCAACCAAGACGTGATTAGGAGCTTTCAGATGGTCGATAGGGATCGAAGCGGCTTCATCGATGACAGGGAATTACAGCAAGCTCTTTCTTCTTCCTTCCACGGTTTCAAAATTGGCACTATTCGTCTCCTCATGTTTCTCTTCAAGCATCCCAACGAACCCCTCAGAATTGGGCCAAAGGAATTTGCAGCCCTCTGGAATTGCCTTGGTCACTGGCGAGGCATATTTGAGAGATACGACAAAGATAGGAGTGGGAAAATTGATCCATTAGAGCTAAGAGATGCTCTATATGGTATTGGCTATACAGTACCAGGCTCGATTCTACAACTTCTGCTTTCAAAGTATAGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATCAAGGGTCTGACGGACAAATTCAAGGAGAAGGACACACGTTACACCGGTTCGGCTAAACTTTCATATGACGACTTTATGTCTATGGTCATTCCTTTCCTTGTATCTTATGATTGAGAAGTTATGCTCATCGTCAAGATTTCTTAGTTTTATGGNACCACATTCAATTGATTGTTTTTTTGGTTTGGTTGTCAATTTTTTTAAGGCGTAACGATTTGTTATATTCAGTTCTGTTCGAGTAATGGTAGACATACACACTTTCTGACAAAGCCTTACACATCACTTCTCATTGACAAATAGTGGCAAGAAAAGTGATTAAATATAAGTTGGTAGGCAGTCANTGATAGATAAATTAGTATTGATTTAATAAGTTTGATATTTAGTTAATAGTAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00844	107450	110866	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000844s00023283.1	PF13405.1	EF-hand_6	102	124	0.00034
Glyur000844s00023283.1	PF13405.1	EF-hand_6	166	190	3.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.353
SRR1783600	control	10.331
SRR1783602	moderate drought stress	14.089
SRR1811619	moderate drought stress	14.440

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.496
DRR006520	Root Summer glycyrrhizin high producing strain	13.234
DRR006521	Root Winter glycyrrhizin high producing strain	23.413
DRR006522	Root Winter glycyrrhizin high producing strain	22.603
DRR006523	Root Summer glycyrrhizin low producing strain	26.561
DRR006524	Root Summer glycyrrhizin low producing strain	25.789
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.935
SRR2868004	Drought Stress (root)	43.833
SRR2967015	Control (root)	41.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.538
SRR9715740	Leaf	24.636
SRR9715741	Leaf	53.252
SRR9715739	Root	11.810
SRR9715742	Root	22.697
SRR9715743	Root	17.931

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.042
SRR8749028	MeJA induced 9h	43.960
SRR8749029	MeJA induced 9h	30.698
SRR8749030	Uninduced	79.769
SRR8749031	Uninduced	231.606
SRR8749032	Uninduced	92.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.853
SRR8400027	Control - Root	20.721