Gene detail information of Glyur000844s00023282 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22400.1 | 2.00E-114 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| NR | XP_004487490.1 | 0 | PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] |
| Swissprot | tr|Q9FMR1|RGAP1_ARATH | 4.00E-154 | Rho GTPase-activating protein 1 |
| trEMBL | tr|G7ITU3|G7ITU3_MEDTR | 0 | PAK-box/P21-Rho-binding domain Rho GTPase activating protein {ECO:0000313|EMBL:AES67082.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 101918 | 106273 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000844s00023282.1 | PF00786.23 | PBD | 76 | 111 | 1.60E-10 |
| Glyur000844s00023282.1 | PF00620.22 | RhoGAP | 139 | 273 | 4.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.712 |
| SRR1783600 | control | 1.720 |
| SRR1783602 | moderate drought stress | 1.085 |
| SRR1811619 | moderate drought stress | 1.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.824 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.556 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.054 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.190 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.325 |
| SRR2868004 | Drought Stress (root) | 7.906 |
| SRR2967015 | Control (root) | 8.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.034 |
| SRR9715740 | Leaf | 5.578 |
| SRR9715741 | Leaf | 6.066 |
| SRR9715739 | Root | 0.941 |
| SRR9715742 | Root | 4.744 |
| SRR9715743 | Root | 3.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.260 |
| SRR8749028 | MeJA induced 9h | 1.182 |
| SRR8749029 | MeJA induced 9h | 0.918 |
| SRR8749030 | Uninduced | 0.946 |
| SRR8749031 | Uninduced | 1.451 |
| SRR8749032 | Uninduced | 0.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.721 |
| SRR8400027 | Control - Root | 6.972 |