Gene detail

Gene detail information of Glyur000844s00023279.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27450.1	1.00E-135	nitrilase-like protein 1
NR	NP_001240162.1	0	uncharacterized protein LOC100787298 [Glycine max]
COG	YP_005031502.1	4.00E-121	N-carbamoylputrescine amidase [Azospirillum brasilense Sp245]
Swissprot	tr\|Q9XGI9\|AGUB_SOLLC	2.00E-176	N-carbamoylputrescine amidase
trEMBL	tr\|C6TN61\|C6TN61_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G07960.1}

Sequence

Transcript Sequence

>Glyur000844s00023279.1
AAGATTTGTAAAAGTTTTATAATTAATGATTCACCATGAACCACCCACGAAGGTGGTCCACCCTAGAAGCAACCCTATCCTACACACAGGAAGAGGTTTCCAAAACACGCAGAGAATTTCTAAAAGGTTAGCAGAATACTAAAAATAATTGTAAGCAGCCAATCATGTTCAAATGGGAGTGTATGTATTGGGGGATTCGGATTCTCTGCCGGTGGGGAATAACACCAACAGGGCCATCTCCTCTTCACAAAATCTGATCCGTAAAAGTGGTTCCTTTCCCTGCGTTGCTGCAAGCTCATGGAGAAGGGGAGAGAAGTTGTTGTCTCAGCTCTGCAGTTTGCTTGCACCGATGATGTCTCAACCAATGTCGCCACCGCCGAGAGGCTTGTTAGAGCTGCTCATAAACTGGGTGCAAACGTCGTTCTGATTCAGGAACTCTTTGAAGGGTATTACTTCTGTCAGGCACAAAGAGAGGATTTCTTTCGAAGAGCTAAGCCATATAAGGGCCATCCTACAATTATGAGGATGCAGAAACTTGCAAAAGAGTTAGGTGTAGTCATACCAGTTAGCTTCTTTGAGGAGGCAAACAATGCACATTATAATTCGATAGCCATAATTGATGCTGATGGAACTGATCTTGGGATTTATAGAAAATCCCATATTCCAGATGGACCAGCTATTTGCTGGGATCAGTGGTTTCCCGAGGCAGCCCGAGCAATGGCNCTTCAAGGTGCTGAGATTTTATTTTATCCAACTGCTATTGGGTCTGAACCTCANGATGGAAGCATTGACTCTCGTGACCATTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATTGAGACTGAACATGGAAAAAGTGAGATAACATTTTATGGGAACTCCTTCATAGCAGGACCTACNGGAGAAATTGTTTCAGCTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAATTTGATTTGGACAAGATCAAATCCATGAGACATTGTTGGGGGGTATTCCGTGATCGGCGTCCAGATCTATACAAGGTTCTTTTAACATTAGATGGCACCAATCCAGTCCTGTGATATATCAACATTTTACTTTGTAAACTGTTATATAGTTATGCCTGGGATACTTTAAGCCTTTGCAAACTCCCAGAGCATTTTTCACTCACCAAGAAGGCAAGAACAAGGGAGAACAGCAAACATCATCTGCAAATTCCGTGTAATTTAATAAGTATGTGGATTAAAGGTCAATGAGCAAACTATTTTGATGTTTTGTAGTACACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00844	88579	93673	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12251	aguB	EC:3.5.1.53	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0006807 nitrogen compound metabolic process

molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000844s00023279.1	PF00795.17	CN_hydrolase	16	125	1.30E-12
Glyur000844s00023279.1	PF00795.17	CN_hydrolase	125	154	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.081
SRR1783600	control	17.571
SRR1783602	moderate drought stress	14.262
SRR1811619	moderate drought stress	14.466

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.073
DRR006520	Root Summer glycyrrhizin high producing strain	35.530
DRR006521	Root Winter glycyrrhizin high producing strain	36.089
DRR006522	Root Winter glycyrrhizin high producing strain	34.945
DRR006523	Root Summer glycyrrhizin low producing strain	38.040
DRR006524	Root Summer glycyrrhizin low producing strain	37.347
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.404
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.490
SRR2868004	Drought Stress (root)	29.659
SRR2967015	Control (root)	29.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.484
SRR9715740	Leaf	31.857
SRR9715741	Leaf	21.970
SRR9715739	Root	5.793
SRR9715742	Root	14.054
SRR9715743	Root	12.530

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.818
SRR8749028	MeJA induced 9h	30.786
SRR8749029	MeJA induced 9h	28.453
SRR8749030	Uninduced	30.776
SRR8749031	Uninduced	16.386
SRR8749032	Uninduced	20.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.943
SRR8400027	Control - Root	34.091