Gene detail information of Glyur000844s00023278 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39200.2 | 8.00E-32 | Ribosomal protein S25 family protein |
| NR | XP_002523819.1 | 2.21E-69 | 40S ribosomal protein S25, putative [Ricinus communis] |
| Swissprot | tr|Q9T029|RS254_ARATH | 6.00E-52 | 40S ribosomal protein S25-4 |
| trEMBL | tr|B9SCV0|B9SCV0_RICCO | 8.00E-70 | 40S ribosomal protein S25, putative {ECO:0000313|EMBL:EEF38545.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 85024 | 86313 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000844s00023278.1 | PF03297.10 | Ribosomal_S25 | 1 | 106 | 1.80E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 308.464 |
| SRR1783600 | control | 309.676 |
| SRR1783602 | moderate drought stress | 229.895 |
| SRR1811619 | moderate drought stress | 229.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 402.747 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 398.169 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 256.596 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 249.673 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 480.644 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 479.723 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 105.161 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 104.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 305.488 |
| SRR2868004 | Drought Stress (root) | 213.004 |
| SRR2967015 | Control (root) | 215.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 97.527 |
| SRR9715740 | Leaf | 98.859 |
| SRR9715741 | Leaf | 91.253 |
| SRR9715739 | Root | 126.381 |
| SRR9715742 | Root | 120.581 |
| SRR9715743 | Root | 111.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 429.062 |
| SRR8749028 | MeJA induced 9h | 235.497 |
| SRR8749029 | MeJA induced 9h | 303.735 |
| SRR8749030 | Uninduced | 104.471 |
| SRR8749031 | Uninduced | 34.346 |
| SRR8749032 | Uninduced | 86.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 292.185 |
| SRR8400027 | Control - Root | 244.319 |