Gene detail

Gene detail information of Glyur000844s00023272.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10230.1	3.00E-155	lycopene cyclase
NR	XP_007150055.1	0	hypothetical protein PHAVU_005G122400g [Phaseolus vulgaris]
COG	YP_001520326.1	2.00E-76	lycopene beta cyclase CrtL [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9SEA0\|CCS_CITSI	0	Capsanthin/capsorubin synthase, chromoplast (Precursor)
trEMBL	tr\|V7BVQ7\|V7BVQ7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22049.1}

Sequence

Transcript Sequence

>Glyur000844s00023272.1
ATGGCAACCCGTTTCATGTTATTTTCTCCACCGCCTCCGACCAATACACACCAACTCCTCCACTCACCCACACCTTCAATATTCCCTCTCCACAAAACCCCATCACCTCCAACTTCAAGAAAACTCAGAGGCAGGGTCCACAGCACCACCAAGTTCGGAAATTTCCTCGACTTAAAGCCCGAGTACCAACCCGAACACTTAGATTTCGACCTTCCATGGTGCCACCCTTCCGATCGCTCTCGCTTCGACGTGATCATAATCGGTGCTGGCCCTGCAGGCATTCGTCTATCACAGCAAGTGTCCCGTTACGGAATCAAGGTTTGTTGTGTTGACCCAAACCCTCTCTATGTGTGGCCCAACAATTATGGTGTTTGGTTGGATGAGTTTGAGAGCCTTGGGCTTGAAGATTGCTTCGACAAAACATGGCCCATGGCTTGTATCTATGTCGATGATAACAAGACCAAGTATTTGGATCGTTGCTATGGCAGGGTTAGTAGGAGGAAGCTGAAGGAGAAATTGATTAAAGGGTGTGTCTCAAATGGNGTTAGATTTCACAAGGCAAAGGCATGGAAGATTGAGCACATGGAGTTTGAGTCTGTTGTTGTGTGTGATGATGGGACAGAACTGAAGGGGAGTTTAGTTGTTGATGCTAGTGGGTTTGGTAGTAATTTTGTAGAGTATGATAATAAGGTGAGAAAGAGAAACCAATATGGTTTTCAGCTTGCTCATGGGGTGCTTGCTGAGGTGGATGCTCACCCTTTTGATTTGGATAAGATGGTTTTGATGGATTGGAGGGATTCCCATTTGGGAAATGAGCCTTACTTGAGAGATGGGAACTCCGAGGTTCCAACTTTCTTGTATGCAATGCCATTTAGTCCCAATTTGATATTTCTTGAAGAGACTTCCCTTGTGAGCCGTCCTGTGTTGTCTTACAATGAGGTGAAGAGGAGGATGGTTGCAAGGTTAAGGCATTTGGGGATTAGAGTGAAAAGGGTTTTGGAGGATGAGAAGTGCTTGATCCCAATGGGGGGTCCTCTACCNATGATACCCCAGAATGTGATGGCCATTGGTGGGAATTCTGGGGTAGTTCATCCTTCCACTGGGTACATGGTGGCTAGGACTATGGCTCTAGCACCTGTTGTTGCTGCTGCCATAGATCAGTGCCTCGGCTCCACTAGAATGATTAGGGGGAAACAGCTTTATGGTAGAGTTTGGAATAGCTTGTGGCCGGTTGAGAGTAGGCTCTGTAGGGAATTTTACTCTTTTGGAATGGAGACTTTGTTGAGGCTTGACTTGAATGGAACAAGGCGCTTTTTTGATGCGTTCTTTGACTTGGAACCTTGTTACTGGCAAGGGTTCCTCTCTTCAAGGTTGACTCTAAAGGAGCTTGTTTGGTTGAGTGTGTCACTCTTTGGACATGCCTCGAATCCATCCAGGTTTGATATTGTCACAAAGTGTCCTGTTCCATTGGCTAAAATGATGGGCAATATCGCTTTACAAAACATAGGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00844	57769	59280	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14593	CCS1	EC:5.3.99.8	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0016117 carotenoid biosynthetic process

molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000844s00023272.1	PF05834.7	Lycopene_cycl	83	478	1.50E-118

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.044
SRR1783600	control	2.198
SRR1783602	moderate drought stress	1.531
SRR1811619	moderate drought stress	1.497

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.856
DRR006520	Root Summer glycyrrhizin high producing strain	7.989
DRR006521	Root Winter glycyrrhizin high producing strain	0.576
DRR006522	Root Winter glycyrrhizin high producing strain	0.715
DRR006523	Root Summer glycyrrhizin low producing strain	24.609
DRR006524	Root Summer glycyrrhizin low producing strain	26.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.087
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.790
SRR2868004	Drought Stress (root)	25.303
SRR2967015	Control (root)	15.186

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.441
SRR9715740	Leaf	0.113
SRR9715741	Leaf	0.782
SRR9715739	Root	0.638
SRR9715742	Root	2.316
SRR9715743	Root	2.344

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.673
SRR8749028	MeJA induced 9h	5.805
SRR8749029	MeJA induced 9h	2.822
SRR8749030	Uninduced	4.978
SRR8749031	Uninduced	2.448
SRR8749032	Uninduced	3.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.610
SRR8400027	Control - Root	2.064