Gene detail information of Glyur000844s00023270 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36100.1 | 8.00E-43 | Uncharacterised protein family (UPF0497) |
| NR | NP_001236338.1 | 2.95E-115 | casparian strip membrane protein 5 [Glycine max] |
| Swissprot | tr|C6T4E0|CASP5_SOYBN | 1.00E-117 | Casparian strip membrane protein 5 |
| trEMBL | tr|I1M4B2|I1M4B2_SOYBN | 4.00E-110 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 50908 | 52157 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000844s00023270.1 | PF04535.7 | DUF588 | 55 | 202 | 1.90E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.111 |
| SRR1783600 | control | 0.111 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.299 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.326 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.338 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.322 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.293 |
| SRR2868004 | Drought Stress (root) | 59.838 |
| SRR2967015 | Control (root) | 51.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.051 |
| SRR9715740 | Leaf | 0.170 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.113 |
| SRR9715742 | Root | 0.049 |
| SRR9715743 | Root | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.108 |
| SRR8749028 | MeJA induced 9h | 0.003 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.987 |
| SRR8400027 | Control - Root | 1.182 |