Gene detail information of Glyur000844s00023261.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27300.1 | 5.00E-49 | NTM1-like 8 |
| NR | XP_004487726.1 | 2.10E-159 | PREDICTED: NAC domain-containing protein 89-like [Cicer arietinum] |
| Swissprot | tr|Q9XIN7|NTL8_ARATH | 4.00E-58 | Protein NTM1-like 8 {ECO:0000303|PubMed:19704545} |
| trEMBL | tr|K7M2Z6|K7M2Z6_SOYBN | 1.00E-156 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G39090.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 728 | 3237 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000844s00023261.1 | PF02365.10 | NAM | 17 | 51 | 3.10E-07 |
| Glyur000844s00023261.1 | PF02365.10 | NAM | 51 | 94 | 8.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.242 |
| SRR1783600 | control | 1.247 |
| SRR1783602 | moderate drought stress | 2.129 |
| SRR1811619 | moderate drought stress | 2.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.637 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.462 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.719 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.450 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.446 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.768 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.224 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.192 |
| SRR2868004 | Drought Stress (root) | 1.656 |
| SRR2967015 | Control (root) | 1.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.418 |
| SRR9715740 | Leaf | 1.962 |
| SRR9715741 | Leaf | 1.824 |
| SRR9715739 | Root | 0.276 |
| SRR9715742 | Root | 1.171 |
| SRR9715743 | Root | 0.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.977 |
| SRR8749028 | MeJA induced 9h | 1.477 |
| SRR8749029 | MeJA induced 9h | 1.859 |
| SRR8749030 | Uninduced | 0.678 |
| SRR8749031 | Uninduced | 0.298 |
| SRR8749032 | Uninduced | 1.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.422 |
| SRR8400027 | Control - Root | 1.473 |