Gene detail information of Glyur000843s00027192.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31880.1 | 4.00E-51 | Leucine-rich repeat protein kinase family protein |
| NR | KHN05807.1 | 3.71E-65 | Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 [Glycine soja] |
| COG | YP_003650685.1 | 7.00E-17 | PASTA sensor domain-containing serine/threonine protein kinase [Thermobispora bispora DSM 43833] |
| Swissprot | tr|Q9SKB2|SBIR1_ARATH | 3.00E-59 | Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (Precursor) |
| trEMBL | tr|I1JXE0|I1JXE0_SOYBN | 3.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G36450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00843 | 88017 | 88478 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.5 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000843s00027192.1 | PF00069.20 | Pkinase | 6 | 126 | 3.40E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.646 |
| SRR1783600 | control | 0.379 |
| SRR1783602 | moderate drought stress | 0.183 |
| SRR1811619 | moderate drought stress | 0.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.470 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.282 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.482 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.537 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.024 |
| SRR2967015 | Control (root) | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.191 |
| SRR9715740 | Leaf | 0.685 |
| SRR9715741 | Leaf | 1.004 |
| SRR9715739 | Root | 1.074 |
| SRR9715742 | Root | 1.424 |
| SRR9715743 | Root | 1.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.184 |
| SRR8749028 | MeJA induced 9h | 0.117 |
| SRR8749029 | MeJA induced 9h | 0.103 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.539 |
| SRR8400027 | Control - Root | 4.191 |