Gene detail information of Glyur000843s00027189 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004513364.1 | 2.41E-78 | PREDICTED: uncharacterized protein LOC101504341 [Cicer arietinum] |
| trEMBL | tr|A0A072U3S5|A0A072U3S5_MEDTR | 8.00E-39 | F-box/RNI/FBD-like domain protein {ECO:0000313|EMBL:KEH23803.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00843 | 54170 | 58764 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000843s00027189.2 | PF08387.5 | FBD | 227 | 261 | 0.0002 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.430 |
| SRR1783600 | control | 2.640 |
| SRR1783602 | moderate drought stress | 3.302 |
| SRR1811619 | moderate drought stress | 3.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.435 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.175 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.961 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.263 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.787 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.271 |
| SRR2868004 | Drought Stress (root) | 0.251 |
| SRR2967015 | Control (root) | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.728 |
| SRR9715740 | Leaf | 19.692 |
| SRR9715741 | Leaf | 9.834 |
| SRR9715739 | Root | 2.487 |
| SRR9715742 | Root | 2.663 |
| SRR9715743 | Root | 2.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.082 |
| SRR8749028 | MeJA induced 9h | 3.424 |
| SRR8749029 | MeJA induced 9h | 0.312 |
| SRR8749030 | Uninduced | 1.557 |
| SRR8749031 | Uninduced | 0.543 |
| SRR8749032 | Uninduced | 0.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.754 |
| SRR8400027 | Control - Root | 6.759 |