Gene detail

Gene detail information of Glyur000843s00027184

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56510.2	9.00E-62	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_004489549.1	4.57E-110	PREDICTED: pre-rRNA-processing protein ESF2-like [Cicer arietinum]
trEMBL	tr\|C6TML1\|C6TML1_SOYBN	3.00E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G07220.1}

Sequence

Transcript Sequence

>Glyur000843s00027184.1
CTGCATTGTCTTGCAAAACCCCTGCGCGATGAAAAGAGAGTGAAAATCNAAACTCGAGTATTCAACCAAACACGAAGAAGAAGAAGGAGAACGAAGGAAGGAAGGAAGGAATGGACGTTTTTGATGAAAAACTTGAGAATGATGCTACAGCGCCGAATGGAGAGAACAGAGAATCAGAATCGAAGAAGAAGATGAATAAGAAGAAGAAACTGAAGATGAAGAAGAAGCTGGAGAAGGAGGCGGAGAAGGCCAATATGCGTGGCGTGTGCTATTTGAGCCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCAAATCCTCTCTCAATTCGGCGATATTCAAAGGATCTTTCTCGCTCCTCAAGGAGGTTCTNCTGCCCAAGTGCCATCTAAGAGGTCACGGGGATCCCGAGACCAAGCATATTCGGAAGGATGGGTTGAATTCGCCAATAAAAGTGTTGCTAAGAGTGTTGCCAATATGTTAAATGGTGAACAGATAGGGGGAAAGAAGAGGTCATCTTTCTACTATGACCTTTGGAATATTAAGTACTTGAGTAAGTTCAAGTGGGATGATCTAACTGAAGAACTAGCCTTGAAGAAAGCTACTCGGGAGCAAAAACTGGCATTAGAACTTTCTGCTGCCAAGAAAGAGAGGGATTTCTATCTGTCCAGAAAGCAGAAGGGTCAACAAGACTCAGTACAAGTGGCAAAAGTAATTCGGCATTTCCCTCAGACAAAGCCAATAGCTNCTAATGCTAAAGAAAGTAAATCTGAATTATCAGATGATATGCTGGATGCTGTATTTGGCGGCTCTTAATGCATGTATTGGTGATACTTTCAACATGGGGTGATGCTTCCTTGATGTATTTTATTAATTTGCAATGATTTATGTAAAAAATATTTTTCCGCATACATAACAAGCAATGAGGGGTTGAAAGTTCTAAATTGGGCAAGATTTGGTTTTCAATGTATCTTTTTGCCACTGTTGCAAAACGGCCAATTATGAATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00843	27089	32219	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000843s00027184.1	PF14259.1	RRM_6	54	134	6.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.940
SRR1783600	control	15.906
SRR1783602	moderate drought stress	9.595
SRR1811619	moderate drought stress	10.004

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.556
DRR006520	Root Summer glycyrrhizin high producing strain	20.038
DRR006521	Root Winter glycyrrhizin high producing strain	9.215
DRR006522	Root Winter glycyrrhizin high producing strain	9.146
DRR006523	Root Summer glycyrrhizin low producing strain	21.631
DRR006524	Root Summer glycyrrhizin low producing strain	20.952
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.669
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.436

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.824
SRR2868004	Drought Stress (root)	22.391
SRR2967015	Control (root)	19.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.776
SRR9715740	Leaf	13.030
SRR9715741	Leaf	8.866
SRR9715739	Root	1.062
SRR9715742	Root	8.061
SRR9715743	Root	6.517

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.642
SRR8749028	MeJA induced 9h	15.262
SRR8749029	MeJA induced 9h	13.473
SRR8749030	Uninduced	4.615
SRR8749031	Uninduced	2.074
SRR8749032	Uninduced	1.947

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.709
SRR8400027	Control - Root	23.208